FMO13417.5prime Sequence
1154 bp (1045 high quality bases) assembled on 2013-02-11
> FMO13417.5prime
CAGTCGACATGATTTGGAGTGTGTTCTTATTTCTGTTGGCTGCTCTTTTA
CGGCCGGTTCGTGGTGATCTGGATGCCCAAAGCCGCATCATTGGAGGTTA
TGATGTGGATATTGAAGATGCCCCGTACCAGGCGGAAGTAATAATAGATG
GCACAGCAATATGCAGTGGGGCGATCATCACATCAGACACCATCATCACA
GCAGCTTCGTGTGTCCAGTCCTACGGTTCAATTGAAGTACGCGTGGGCAC
CAGTTCCCGCGATTATGATGGAACTGGATTCCTGCTCGAAGTCTGTGAAA
TAATTAATCACCCGCAGTACAATTGCTGGCGTTTCGATAACAATCTGGCA
CTGTTGAAGTTGTGCGATCCGCTCAAGACCTCCGAAGCTATTCAGCCCAT
CAGCATAGCAGAGGATGAACCGGACGATGGTTCGTGGTGCACTGTCTCCG
GCTGGGGATCCACCAGTTGGTGGGGCAGCTGGTGGGACAGGTGCTTCGGC
AGTCTGCCGGACTATCTGCAGATGGCATGGGTCAGCGTCTACAATCGGGA
GCAGTGCGCCGCGGATCGCGGTGTTTGGTTCGGACTCTGGGACAATGGCA
TCTCGTACCTTACCCTCTGCACTCATAATGGCGCCGGAGGATGCTCCTAC
GATACGGGAGCTCCCTTGGTGATAGATGGACAACTCGTGGGCATTCTATC
CGAAGGCGGCTGCACCACCAAACCAGATGTCTACGCCAATGTACCTTGGT
TCACAGGTTGGATTGCCGAGAACACCGAAGATGAGGATACAACCGCTTCG
ACAAGTACTTCTAGTGATAGTAGTACCACTGTGGCTAGCACTACAACTGC
TACTGTACCGAGCACTGTACCTAGTTCTGAACCTAGCACAGACCTGTTGC
AGTACCTAGTACTGAACCTTCCACAGTACCGTACCCAGTACCATATCTAG
TACTTACCTAGTACAGTCTCTAGTACCTTACCTAGTGCAGTCTCTAGTAC
CTTACTAGGAACAGTCTTCTAGAACTTTACCTAAGGGCAGTCTCTAGACC
TTAACTAAGATACCTTTCTCAGGACTACAATCTAGACTTTACCTAAGAAC
GTATTTAGTACCCTTTACCTAAGTACCTTAGCCAGGTACTAGATTCACAC
ATTT
FMO13417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32834-RB | 1752 | CG32834-RB | 19..1142 | 9..1135 | 5090 | 97.6 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 985..1066 | 925..1005 | 295 | 91.5 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1009..1085 | 925..1000 | 210 | 85.7 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1069..1131 | 925..986 | 200 | 88.9 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 1105..1192 | 925..1010 | 180 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22983236..22984275 | 1047..9 | 4855 | 98.8 | Minus |
| 2R | 25286936 | 2R | 22983228..22983309 | 1005..925 | 270 | 91.5 | Minus |
| 2R | 25286936 | 2R | 22983252..22983333 | 1005..925 | 255 | 90.2 | Minus |
| 2R | 25286936 | 2R | 22983209..22983285 | 1000..925 | 185 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:34 has no hits.
FMO13417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:36 Download gff for
FMO13417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 1..1000 | 9..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:55 Download gff for
FMO13417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 19..1018 | 9..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:43 Download gff for
FMO13417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 19..1018 | 9..1005 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:43 Download gff for
FMO13417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22983276..22984275 | 9..1005 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:55 Download gff for
FMO13417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18870799..18871798 | 9..1005 | 99 | | Minus |
