FMO13420.5prime Sequence
1120 bp (1000 high quality bases) assembled on 2013-02-11
> FMO13420.5prime
CAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGCAGTAGCAGCT
CTGCTGCTTTTGGAGGCGATTCCCGCGGATGCAAAGCGGCGCAAGCACAA
GGGCTCCGATCATCACTATGAAAAGTCTGATCCCCACAAGACCAAGACAA
AGACCAAGTGGTCTAGCTCCACGGATTTGGCTGGAAACACTCCAATTTCC
ACCGAAGAGCACGGCTACTATGTAAAGCGCACCTTTGCGGCTCCCGGTGA
GATTGGAGCCGCACAGAAGCGTCTAAGTCCCCCCTATTTGGCCATTCCCA
TCGCCTGGTTCAGCTGTGAGTCGGGCCAGAAGAATTGCCAGTCTTCCAAT
TCCGCGGCTATCAACAGTGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTG
CGACGATGATTGCGATGAACTGTACGAGCCCATCTGCGGCAGGACCACCT
CAGAGGTGGCCGTTTTCTACAACAAGTGCAAGTTGGGTGTAGCCAAGTGC
CGATCCCACGGTCTTTGGACGGACTTCGCCTATGCCGAGTGCCAGGCGAA
ATATCCGCAGGAAACTGCCTATGCCGACAAGAAGTTCCGGTCATCGCCTT
ATTTCCGGGATGCGGCCATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAG
CGTAAGCAGGAGGAGGAACAACACAAGCTGGAGAAGGAGCAAAAGAAGAA
GGAGAAGGCTGAGAAAAATAAGAACGAGAAGGACAGCAGCGAAAGCAGCG
AGGAGAAAGATGACCAAAAGGAAAACAAGCAGAAAGATCCCCTTTCCCTA
ATGCCACAGAAGAAAGTGGAATCCACCCAGAAGCCAGTGCCAGTTCCTAT
TCAGTAGCAGTTCCAAACCAGTTTCAGTTTTGGAGCCTGCAAAGACGACC
GAGGACATCGCTATGCCGCTATGCACTGAAGACACTCCCACGCCCAAACC
TCTGGAGATCGCGCCCCTTCACAGCAGACCAACCAGGCCAGGACATGATA
GCTCAGTACCCAGTAGCTGCAAGCTTTCTAAGAACATCGTTTGGGCGCGC
CCAGGTAATGGTCATAATCCATATTCGTATCCTATCCTGATTCCCACCTA
GCCTAGAGATCCTGTCTGAC
FMO13420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL1-RA | 1160 | CG10717-RA | 39..1063 | 7..1018 | 4750 | 98.3 | Plus |
| ImpL1-RC | 1157 | CG10717-RC | 39..1060 | 7..1018 | 4695 | 98 | Plus |
| ImpL1-RB | 1230 | CG10717-RB | 139..1133 | 37..1018 | 4600 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13382908..13383848 | 37..972 | 4425 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 18:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 633..751 | 117 | 56.8 | Plus |
FMO13420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:40 Download gff for
FMO13420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RA | 40..1039 | 1..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:01 Download gff for
FMO13420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RA | 32..1031 | 1..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:47 Download gff for
FMO13420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RA | 32..1031 | 1..990 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:47 Download gff for
FMO13420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13382796..13382835 | 1..39 | 95 | -> | Plus |
| 3L | 13382911..13383848 | 40..972 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:01 Download gff for
FMO13420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13375896..13375935 | 1..39 | 95 | -> | Plus |
| arm_3L | 13376011..13376948 | 40..972 | 99 | == | Plus |
