FMO13421.5prime Sequence
1153 bp (1041 high quality bases) assembled on 2013-02-11
> FMO13421.5prime
CAGTCGACATGACGTGCAGCAGGATGTGGATCAGGAGTCGCTGGCTGGGC
CTGCTGCTCCACTATTGGCTGGTCGTGGTTACGCAAGGCGGTGGCGTACG
TCCGCTTTACGGACTCCATTCCGACGAACTGGTGGCGGGTGAGGGGCAGT
TGGTGGTGCCACGACGCGTTCATCCCGATGGTGCGTTTATGACCCACCAA
TTGGAGTACGCACACGAACTGGATCATCGGCGGCATCGGCAGAGGCGCAG
CCTGAACTCGGAACACGATACCCAGGCGGCGGACCTGCATCTGCTGTTGC
CGCTGGCGAACGAGACACTGCATCTGGAGCTTATGGCGCACAGCTACTTT
CTGGCCCCGAATCTGGTGGTGGAGCGCCACCGGCGGGATCTGCGCACTCG
GTCACCGTTGACAACGCGGCACCTCAACTGTCACTTCCATGGAAAGGTGC
GCGGCCAACCGGCCACCAATGTGGCCATCTCCACATGCGCCGGACTGGTG
GGTCACATCCGGACGGCAGGCAATGAGTACTTCATTGAGCCCTCGAAGGA
GCACGAGCCGCATCCGGTCAACGGGCATCCGCACGTGGTCTTCCAGCGCT
CCTCCGTCAAACCGAAGCATTCGTTGCGAAAGCGAAACAAGCGCAAGCGG
GGCGGCAAATCGGGATCCGGAGCCGAGGTCAGCAATTGCGGCACGCGGGA
GCCACGCCGTCGAATGGAGACGAGACTGGAGTGGCAGGCCAGGGGCAAGG
TGAAGGTCCAGGGAGGCCGTCAAATTAGCGCCACCATCACCACCACCACC
ATCATCATCACAAGCACAAGTACCGCCATCATCAGCAGAAAATCAGCAGA
GTTCCGCACACCAAGTTCAAGTACGAGACGCAGTTCCAAACGGAGCCGGA
TCACGCAGAGATTCCCCGGCGCAGCGATCCATCAGCAGTCCACGGCATGT
GGAGACGCTCATCGTGCCGATGCCACCATGTCGGCGTTTCACAGGAACCT
CACGGCTATCCTGCTGACCATCATGAAACATGGTGTCCGCATTGTCAGGA
TTCCCAGGCATTGGCCACCTCCATTCGAGATCGTGTGTGTGCGCATTATT
CCCACCTGGAACAAAGAAGGGAGTTCCAGCTTCCAGCTTGATCTCACGCA
ATG
FMO13421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4096-RC | 3372 | CG4096-RC | 185..1321 | 8..1150 | 5150 | 97.6 | Plus |
| CG4096-RB | 3920 | CG4096-RB | 729..1865 | 8..1150 | 5150 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5703115..5703607 | 8..500 | 2465 | 100 | Plus |
| X | 23542271 | X | 5703828..5704259 | 616..1045 | 1855 | 98.4 | Plus |
| X | 23542271 | X | 5703655..5703775 | 497..617 | 605 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2448..2506 | 782..840 | 115 | 66.1 | Plus |
FMO13421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:41 Download gff for
FMO13421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RB | 179..1247 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:02 Download gff for
FMO13421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RB | 723..1791 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:48 Download gff for
FMO13421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4096-RB | 723..1791 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:48 Download gff for
FMO13421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5703109..5703604 | 1..497 | 99 | -> | Plus |
| X | 5703656..5703775 | 498..617 | 100 | -> | Plus |
| X | 5703830..5704271 | 618..1056 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:02 Download gff for
FMO13421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5597142..5597637 | 1..497 | 99 | -> | Plus |
| arm_X | 5597689..5597808 | 498..617 | 100 | -> | Plus |
| arm_X | 5597863..5598304 | 618..1056 | 97 | -> | Plus |
