FMO13423.5prime Sequence
1153 bp (1052 high quality bases) assembled on 2013-02-11
> FMO13423.5prime
CAGTCGACATGTTCAATGTTCTACAGCGCCTGCTGGGTGTCGATCAGCCG
GCCAATAAGGTCGTGGAAATTAAGAGCGAAGCGCTGGGGACACTTCAAGT
CCTGGCCCGCGATGACGCCATGCTCCTCTTTGCACCGCCCTTCAACAGCA
GCAATGAAAAACGAGCCGTCTATGAGATCATTTTGCAGCGACCCACCTCG
GATTCCAATACCACATCCTTCAGTCTGTACCGGTCGCCGGTGCAGCAGGA
AGCCGAGGAACGCTTCAATGCCTTTCTGCAAAGGCTGCCCGTTTTCGTCA
GCATTGTGAAAGAGTACTACAATGTAAATGGGCTGCAGAAAGCTTGCGAT
GCCTTGGCTGATAATCCCTCCTGGACGCTGTCCCATTTGATTGCCTACTT
CAATCTGGTGGACTACATTAGCAATCCCAAGATGCTCCAGTGCGTGGACC
AAGCAGATGCCGCCACCCTAATGTCGCCCTTCCAGTTGGCCATCAAACAG
GGTCACATGGAGATGGTGAAGGCTCTGCTGCCGCTGAGCAAGCTGGAACA
CTTGGATATAAACAGCAATTCGGTGTTTCATTACGCCGCCAGCACCACCA
AAGAGATTATCAATCTTATCATCGATAAAAGCACGGTAAATCTGAATCAT
CTCAACTCCGATGGGTACACACCACTTCATGTCGCCTGCCTCGCCGACAA
GCCAGAGAATGTGAAGGCACTGTTGCTGGCTGGGGCCAATGTCAATCTCA
ATGCCAAGGACATCCGCAAAGTGTACAAGACATCCGCACCGACCACGGTT
TCCTCGTTTCTGCGCACCAATGTTAGCAAGCTGTACACACAGGACATGAA
ATATGGCGGCACTCCTCTGCACTGGTGTTCCTCCCGTGAAACCCTGCATG
CGCTGATCATGGAGGGTTGTGATGTCAACGCCACGAACTTTGATGGACGG
ACAGCACTGCACGTGATGGTGCCAGGAATCGGTTCGAGTGCGTTGTCAAA
CTACTGGCCACGATGCGAGATCGATGTTGCTGGACAAGACGAATGCAGCT
TTGCCACATTGGCCAATGAGAAGAAACCTATGCCGATCGGTCCAATGCTC
GTGGTCCTTTGGGTGTGACATTCAATCTGAGAACATGATGCAAACTGCCA
CGT
FMO13423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iPLA2-VIA-RA | 3269 | CG6718-RA | 148..1296 | 9..1153 | 5250 | 97.9 | Plus |
| iPLA2-VIA-RD | 3592 | CG6718-RD | 480..1619 | 18..1153 | 5205 | 97.9 | Plus |
| iPLA2-VIA-RC | 3685 | CG6718-RC | 573..1712 | 18..1153 | 5205 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9862400..9862908 | 1121..615 | 1920 | 95.7 | Minus |
| 3L | 28110227 | 3L | 9862963..9863264 | 614..313 | 1510 | 100 | Minus |
| 3L | 28110227 | 3L | 9863321..9863617 | 314..18 | 1485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:16 has no hits.
FMO13423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:30 Download gff for
FMO13423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 151..1208 | 1..1054 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:44 Download gff for
FMO13423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 151..1208 | 1..1054 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:32 Download gff for
FMO13423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 141..1198 | 1..1054 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:32 Download gff for
FMO13423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9862366..9862908 | 615..1153 | 95 | <- | Minus |
| 3L | 9862963..9863262 | 315..614 | 100 | <- | Minus |
| 3L | 9863321..9863617 | 18..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:44 Download gff for
FMO13423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9855466..9856008 | 615..1153 | 95 | <- | Minus |
| arm_3L | 9856063..9856362 | 315..614 | 100 | <- | Minus |
| arm_3L | 9856421..9856717 | 18..314 | 100 | | Minus |
