FMO13424.5prime Sequence
1185 bp (1043 high quality bases) assembled on 2013-02-11
> FMO13424.5prime
CAGTCGACATGGATTATCGTTTGGTGCCATGTGGTTGCTGGTTGCTCCCC
CTGCTCGGCCTAGCCCTCTTCCCGTTTCCACCGGTCCACACGGCTGACGT
CACCATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCCGGCTGGCCCTTT
TCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAGCCCGGCGAGAAC
ATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGCGATGGCCAGGCT
GGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGGGACTGGGCTTGG
CCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCACCAGGTGCTGGCC
GCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAAGATTTTCGTCAT
GGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGTTATCCAAGCAGT
TCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAATGTACAAGCAGCG
GCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCATCTGATCAAGGA
CCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGACTCGTCCTTGTGA
ACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTCGCCAAACACTTA
ACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAACAGTTCAGGTTCC
GATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATCTGCCGGCGCTAG
ATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGACCTCTCTATGCTG
ATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCTGGAGGAGAAGTT
GCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGTACGAAACAAAGG
TAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAAGTGAATTGTCTG
AGTTTTCCAGAAGCTGGGCATGTCAGGATGTTCTCCGATCAGGCTGATTT
GGAAAATGCTACAAGTCCGGAGCCATTGAAAGTGTCAGCATCATACACAG
CCTTCATTGAAAGTCACGAGGAGGACCGGAGCTTGCGGCCGCCACGGTAT
GCGGTGAATGGCCCGTACTGCCTTTCAGTCAAACCTGCATGGCAACGCAT
CCATTGCTTCCACGTGAGACCAATTACGATCGTGC
FMO13424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RI | 1370 | CG9453-RI | 59..1247 | 9..1181 | 5220 | 97.2 | Plus |
| Spn42Da-RF | 1669 | CG9453-RF | 59..1157 | 9..1097 | 5165 | 98.6 | Plus |
| Spn42Da-RE | 1643 | CG9453-RE | 59..1157 | 9..1097 | 5165 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878359 | 963..33 | 4565 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6877221..6877364 | 1097..962 | 255 | 88.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:19 has no hits.
FMO13424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:31 Download gff for
FMO13424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RI | 55..1181 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:47 Download gff for
FMO13424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RI | 59..1185 | 9..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:34 Download gff for
FMO13424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RI | 59..1185 | 9..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:34 Download gff for
FMO13424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877427..6878358 | 34..963 | 99 | <- | Minus |
| 2R | 6878845..6878869 | 9..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:47 Download gff for
FMO13424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764932..2765863 | 34..963 | 99 | <- | Minus |
| arm_2R | 2766350..2766374 | 9..33 | 100 | | Minus |
