FMO13427.5prime Sequence
1131 bp (1024 high quality bases) assembled on 2013-02-11
> FMO13427.5prime
CAGTCGACATGATGATTTCGTGTAAAAAATTATTCGTGTTCCGGCAGCTG
CCGGCGGTGCGCCGTTGCCTAGCGGCAGCCGCGTTCTCCACGCCACGCGC
GACCTCCTACCGAATCCTCTCCAGCGCCGGGAGCGGAAGTACCCGGGCAG
ACGCACCCCAAGTGCGCCGCCTGCACACCACGCGCGACCTCCTGGCCAAG
GACTACTACGCCACGCTGGGCGTTGCCAAGAACGCCAACGGCAAGGACAT
CAAGAAAGCCTACTACCAGCTGGCCAAGAAGTACCATCCGGACACGAACA
AGGAGGATCCGGATGCGGGCCGCAAGTTCCAGGAGGTCTCCGAGGCCTAC
GAAGTGCTCAGCGACGAGCAGAAGCGCCGTGAGTACGACACCTATGGCCA
GACGGCGGAAAACATTGGTCGCCAGGGCGGCGGATTCCCTGGCGGAGGAG
CCGGTGGCTTTGGCCCCGAGGGTTTCTCGCAGAGCTGGCAGTTCCGCTCG
AGCATCGACCCCGAGGAGCTCTTCCGCAAGATCTTCGGCGAGGGCAACTT
TCGAACTAACTCGTTCGACGACTTCGCCGACTCCAAGTTCGGATTCGGCC
AGGCCCAGGAGATGGTCATGGACCTGACCTTTGCCCAGGCGGCGCGCGGC
GTTAACAAGGATGTCAACGTCAACGTGGTGGACCAGTGCCCCAAGTGCGC
CGGCACCAAGTGCGAGCCGGGCACCAAGCCAGGTCGCTGTCAGTACTGCA
ACGGCACCGGCTTCGAAACGGTGTCCACTGGGCCCTTCGTAATGCGCTCC
ACTTGCCGCTACTGCCAGGGCACGCGGCAGCACATTAAGTATCCGTGCAG
CGAGTGCGAGGGCAAGGGCCGCACGGGTCCAGCGCCGCAAGGTCACCGTG
CCGGTGCCGGCTGGCATTGAGACGGGCAAACGGTGCGAATGCAGGTGGGC
CAGCAAGGAGCTGTTTCGTCACGTTCCGCGTGAAGCGGAGCGACTACTTC
CGGCGCGAAGGGCGCCGATGTTGCACAGGACGCGGCATATTCCTGGGCCC
AAGGCGGTGCTTGGGCCGGCCTGGTGCCGGGTTCCAGACTATTACAGGAT
CAATGATTCATCGAGTGAGCCTGGCATCTTC
FMO13427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)tid-RD | 1786 | CG5504-RD | 74..1122 | 9..1061 | 4985 | 98.8 | Plus |
| l(2)tid-RE | 1505 | CG5504-RE | 74..1122 | 9..1061 | 4985 | 98.8 | Plus |
| l(2)tid-RC | 1959 | CG5504-RC | 242..1290 | 9..1061 | 4985 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23707154..23708163 | 9..1021 | 4790 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:03 has no hits.
FMO13427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:48 Download gff for
FMO13427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)tid-RA | 293..1355 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:15 Download gff for
FMO13427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)tid-RB | 74..1136 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:00 Download gff for
FMO13427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)tid-RC | 242..1304 | 9..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:00 Download gff for
FMO13427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23707154..23708197 | 9..1053 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:15 Download gff for
FMO13427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19594677..19595720 | 9..1053 | 98 | -> | Plus |
