FMO13428.5prime Sequence
339 bp (261 high quality bases) assembled on 2013-02-11
> FMO13428.5prime
CAGTCGACATGGTCAAATACCCACTGATACTACTTTTGATTGGCTGTGCC
GCTGCCCAGGAACCAAGGCGCGATGGAGAGTGGCCTCCGCCAGCGATTTT
AAAACTGGGCAAGCACTTCCATGACATTTGTGCTCCCAAAACTGGCGTTA
CTGATGAGGCCATCAAGGAGTTCAGCGATGGGCAAATTCATGAGGACGAG
GCCCTCAAGTGCTATATGAACTGCCTCTTCCACGAGTTCGAGGTGGTCGA
CGACAATGGGGATGTCCACATGGAGAAGGTCTTGGAAGCCTTCCGGGAAA
AAACTAAGGACATTTATGTTGAGGCTTCCAGGGAAGGCT
FMO13428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83b-RA | 528 | CG11422-RA | 15..339 | 9..330 | 1430 | 96.9 | Plus |
| Obp83a-RC | 823 | CG11421-RC | 408..532 | 159..283 | 370 | 86.4 | Plus |
| Obp83a-RB | 885 | CG11421-RB | 470..594 | 159..283 | 370 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5976395..5976543 | 303..156 | 650 | 97.3 | Minus |
| 3R | 32079331 | 3R | 5976594..5976671 | 156..79 | 390 | 100 | Minus |
| 3R | 32079331 | 3R | 5972500..5972624 | 283..159 | 370 | 86.4 | Minus |
| 3R | 32079331 | 3R | 5976732..5976803 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:07 has no hits.
FMO13428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:50 Download gff for
FMO13428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-E-RA | 10..310 | 4..303 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:17 Download gff for
FMO13428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83b-RA | 10..310 | 4..303 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:01 Download gff for
FMO13428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83b-RA | 10..310 | 4..303 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:01 Download gff for
FMO13428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5976403..5976542 | 157..295 | 97 | <- | Minus |
| 3R | 5976594..5976669 | 81..156 | 100 | <- | Minus |
| 3R | 5976732..5976808 | 4..80 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:17 Download gff for
FMO13428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1802125..1802264 | 157..295 | 97 | <- | Minus |
| arm_3R | 1802316..1802391 | 81..156 | 100 | <- | Minus |
| arm_3R | 1802454..1802530 | 4..80 | 97 | | Minus |
