FMO13431.5prime Sequence
1138 bp (1039 high quality bases) assembled on 2013-02-11
> FMO13431.5prime
CAGTCGACATGTCGTACAAAGCGTTTGTCTTCTTTTGTCTCTATATTGAC
CTTGCCAAGGGACTAATTACATCCGAAATTATAGCCTCGCACAACTATCC
GGTAGAAGTACACACAGTGCTCACACGAGATGGGTATTTACTCGACGCGT
TCCGGATACCGGGCTCTAAATTTTGTCAGCAATCTGGACCAAAGCCGGCG
GTTCTCTTTCAGCACGGAATGTCCGCGTCCTCGGACGTTTTCCTGCTAAA
CGGACCTCAGGATTCATTGGCATTCATGTTGGCCGACGCCTGCTTCGATG
TGTGGCTGAGTAACTCAAGGGGCACTCGGTATTCCCGACGCCACGTGTCT
TTGGATCCCTCTGATGAGGCCTTCTGGCGCTTCAGCTGGCACGAGATTGG
AACGGAGGACGTGGCCGCTTTCATAGACTACATTCTGGACACCACGAAGC
AGAGAGCGTTGCACTTCTTGGGTCACTCGCAGGGATGCACCACGCTGGTG
GTGCTCCTCAGCATGCGACCGGAGTACAACAAGTTGGTCAAGACCGCAGT
CCTATTAGCTCCGGCTGTCTTTATGCGCCACACAAGCACCCTTTCGCAGA
CCGTCTTCAGGAGTTTCATAATGGCCATGCCCGACAAGGAGTTCATGTAC
CACAACGGAGTTTTAAACAAACTCTTGAGTAATGTATGCGGGCTATTCGT
TGCCAGGGTGTTCTGCACAACCTTCTTCTTGATTTCCAACGGAAAAATTT
CCAAACACCTAAACACAAGCGTTATTCCTCTGATTGCCGCCACGCTTCCT
GCGGGAGTTTCTTCTCGCCAGCCCAAGCACTTCATCCAGCTCACGGACAG
CGGCAAGTTCAGACCATTCGATTTCGGGATCCTGAGGAACTTGATCAACT
ACAGAGCCTAGAACCTCCAGACTATACTTTGAGCAACGTCCGTCCCTGAC
GCCAGTCCACATATTCTACAGCGACGATGATAGTTCGACGCAAGAGGATA
TCAAACTTTGCCGCCAGAGGTGCCGGAGGTGGTGATGCACCGGATCTCAA
CGGGCTGGCACTACGACTTCTGCAATTCATGACCGTGCTGACGTATCACA
AGCCCGTCATTGAATTTTGAAGCTTTGGAGCCACTCAC
FMO13431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-RB | 1248 | CG11598-RB | 1..1147 | 9..1137 | 5185 | 97.7 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 65..1126 | 73..1118 | 2525 | 83.5 | Plus |
| CG11600-RB | 1330 | CG11600-RB | 440..601 | 369..530 | 285 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12635035..12635730 | 72..767 | 3480 | 100 | Plus |
| 3R | 32079331 | 3R | 12633483..12634177 | 73..767 | 1765 | 83.6 | Plus |
| 3R | 32079331 | 3R | 12635795..12636084 | 768..1051 | 1110 | 96.9 | Plus |
| 3R | 32079331 | 3R | 12634248..12634456 | 774..980 | 660 | 90 | Plus |
| 3R | 32079331 | 3R | 12634912..12634979 | 4..71 | 325 | 98.5 | Plus |
| 3R | 32079331 | 3R | 12637033..12637194 | 369..530 | 285 | 78.4 | Plus |
| 3R | 32079331 | 3R | 12639039..12639193 | 375..529 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:15 has no hits.
FMO13431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:53 Download gff for
FMO13431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1062 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:22 Download gff for
FMO13431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1062 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:06 Download gff for
FMO13431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1062 | 9..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:06 Download gff for
FMO13431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12635795..12636084 | 768..1051 | 97 | == | Plus |
| 3R | 12634910..12634979 | 1..71 | 95 | -> | Plus |
| 3R | 12635035..12635730 | 72..767 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:22 Download gff for
FMO13431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8460632..8460701 | 1..71 | 95 | -> | Plus |
| arm_3R | 8460757..8461452 | 72..767 | 100 | -> | Plus |
| arm_3R | 8461517..8461806 | 768..1051 | 97 | == | Plus |
