Clone FMO13434 Report

Search the DGRC for FMO13434

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:134
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptBG642167-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13434.5prime Sequence

344 bp (344 high quality bases) assembled on 2013-02-11

> FMO13434.5prime
CAGTCGACATGTCGTTAGCTGTATTGACTTTTCTAGTACTCTGTGGATTT
TCCTTTCAGCATCAGGCAGTTGCTGACTGCGGCGCAGAAACATCCGATCT
CTGGAAGGATGATACGGATTCGGACGAAGGAACTTGCACTCAAGCCTCGA
TAAATAATGATAGGAAGGAAGATCCATTTGAAAATGATCCAATTATAAGG
CAATCGAAAAAGAAAGTGGAAAACAATGACAGCATGAATTCAGAAGTTCA
GTTGCCACTATTTCAGAATATAATAAAGATATTCAAGTTTATATGGCTGG
TGCTGAGTGTTTGGATGAATTGGAAGGCAAGCTTTCTAGACCAT

FMO13434.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
BG642167-RA 384 CG34103-RA 22..340 8..326 1595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25806663..25806917 72..326 1275 100 Plus
3R 32079331 3R 25806466..25806530 8..72 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:45:48 has no hits.

FMO13434.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:42 Download gff for FMO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
BG642167-RA 1..321 9..330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:04 Download gff for FMO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
BG642167-RA 1..321 9..330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:51 Download gff for FMO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
BG642167-RA 14..343 1..330 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:51 Download gff for FMO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25806458..25806530 1..72 94 -> Plus
3R 25806664..25806920 73..330 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:04 Download gff for FMO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21632180..21632252 1..72 94 -> Plus
arm_3R 21632386..21632642 73..330 99   Plus