FMO13435.5prime Sequence
1122 bp (1040 high quality bases) assembled on 2013-02-11
> FMO13435.5prime
CAGTCGACATGGCTTCGTTCCGGTTTCAATTGTTGCAGCTCCTAGTGGTT
CTCAGCCAAGGTTGGGCCAACCTCAACGTGCAGAACAACTATAGAAACAT
GATGGTCCGACTGGCCACTAACAAGGCAGCGCTCGCCGGTATTCAAGTCC
TCCGCGAGGGACGCGTGGAGGTGAGCTTTGACTTTGGCGCCTCATGGGGT
ACGATCTGCAGCACTTCGTGGAGCATGCGGGAGGCAAATGTGGTGTGCCG
ACAGCTAGGATTGGGCTACGCTTCCAAGGCAAGCCAGGGAACGGAGCACG
GGGATAGCCGGAAGTATCCCTGGGGCATGGTGGGCACTCTGTGCAGGGGA
ACCGAGCGTCGCCTAGCCGACTGCATCCGGGAGTCCCACTACCCGAACCT
CTGCAATGCCAGAAACCATAATGTCAGCATTGCGGCCTGTGTTAGCCATT
CGGCTGACCTGGAGATCGGACTGGTGGACATCGAGAGAACCGCCCGCCTG
GAGGCCGTGCCCATGTCGCGGCTCACATGCGCCATGGAAGAGCACTGTGT
TTCCGCCGACGCTTACGAGATCCGAAGGACGAATCCGCACGCTGCGAGGA
TACTGCTTCGCTTTTCCGTTAAGGCTTCCAATGTGGGCACCGCCGATGTA
AGCCCATACGCTAACTACAAGGAATGGGTATGGCACCAGTGCCACAGACA
CTACCACAGCATGAATGTTTTTGCCACCTTTGATGTTTACGACCTCAACT
ACCGGAAGGTGGCCCAGGGGCACAAGGCCTCCTTTTGCCTGATGGACAGT
GAATGCCGGCCAGGAGTACGGCAAAAGTACACCTGTGGCAACACCACCCA
AGGCATTTCCGTGGGCTGCGCAGACACCTACACCGATGTGTTGGACTGCC
AGTGGGTGGATGTTACCCGAGTTCCCATCAACCGACGCTACATCCTGCGA
GTGTCCTCAATCCCGAGTACAAGCTGGGAGAGATATCCTTCGAGACACCG
AGCTGATGCCTTCTTGACTACCACTGGCGTACGGCAGACGACAAGAATTT
CAACTGTCGGCCAAAGGCCGCTTTGGATTAAGATTGCAAGCTTTCTTAGA
CATTCGTTGACCGCCGGTCCCA
FMO13435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-RA | 1435 | CG11335-RA | 149..1228 | 9..1085 | 5160 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31458877..31459721 | 853..9 | 4225 | 100 | Minus |
| 3R | 32079331 | 3R | 31458587..31458824 | 1085..851 | 795 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:51 has no hits.
FMO13435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:43 Download gff for
FMO13435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 147..1228 | 5..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:07 Download gff for
FMO13435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 147..1228 | 5..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:53 Download gff for
FMO13435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 147..1228 | 5..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:53 Download gff for
FMO13435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31458587..31458822 | 853..1085 | 94 | <- | Minus |
| 3R | 31458878..31459723 | 5..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:07 Download gff for
FMO13435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27284309..27284544 | 853..1085 | 94 | <- | Minus |
| arm_3R | 27284600..27285445 | 5..852 | 99 | | Minus |
