FMO13436.5prime Sequence
1145 bp (1041 high quality bases) assembled on 2013-02-11
> FMO13436.5prime
CAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTTCGACTAAT
CCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAGGGCAGCGC
CGAGCGAAAAGCGTCCAAAGACCGTGAGGAGAAACTAAAATATGCCCGCG
ATCGCCAAAATGAGGAGCGCCACCGGAAAATCGAGGAACTGCGTGCCCAG
GCGGAGGCCGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAGCGCCGTCG
ACGCATCGAGGAGATCCGTACCCGGGACACAGAGAAGCGCCACCAGGTGG
AGGAGCGCAAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCCGCGAGTAC
ATCCTCAAAAAGAATCAGGAACGCGAGTCCCGGATAGAAGTGAAAAAACG
GGACAGAAACTCCATCGGCTTCGCATTTGGCTCCTCGACTCCCCGCCTGC
TGGATGTGCCCGCGGATTATGGTCTGGTATCGCCCAGTGCCTTTTGGGGT
CAGCGGAGGTCCACATCTATATCGAACGTAGCGGGCGCCTCGCTCACACG
TCGAAGTTCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAAGCGTGCCT
CCTCATCGACGGACCGACAAGATGGCTCGCGATCGGGAAATGCCACGCCC
GGCGGACACTTCAATAACTCAAGGCCCGGCAGCGCCATGTCCACATCGAC
AAACATGTCCACATCCGGGCTGGTGCCCAGGCGACCGGCAACGGCACCCC
GGAAACCGAGGCCCGCCAGTATCGCCGGACCGGGCATGTCTCTCGAGGAG
ATTAACAAACTCAAGAGGGATCAGAAGCCGCCCGTGAGACGACAGCCGCC
TCGCCATCCGCACAAACGACACCCAAACGAACTGCAAACCTTATGTCCAC
CTCCCTGATCGTGACCTCCAGCTCATCGCGGCTGAGCAGCGCCGAAAGAA
GACGCCTTCGAAGCGGGAACCTCCGGTACCCAAGGCAGCATCAGCTTCAA
GCGCTGCCAAGTTCGCACAGCCAGTTTCGAGCGCTTCAGTAGCTTACCAG
GATCCGAAACCAAGGAATCCTCTGCCAAGACTTAAGTCCGATGAATGGTC
CCAGCAGCCGTTACTCCTCCATCACCATACCCAGACTCTCTGACC
FMO13436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ens-RB | 3887 | CG14998-RB | 49..1169 | 9..1125 | 5125 | 97.7 | Plus |
| ens-RH | 3878 | CG14998-RH | 49..1160 | 9..1125 | 4980 | 96.9 | Plus |
| ens-RC | 3833 | CG14998-RC | 95..1115 | 109..1125 | 4625 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4131955..4132214 | 369..110 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 4126989..4127163 | 798..624 | 860 | 99.4 | Minus |
| 3L | 28110227 | 3L | 4126761..4126932 | 967..798 | 760 | 98.8 | Minus |
| 3L | 28110227 | 3L | 4131748..4131892 | 510..366 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4131120..4131238 | 625..507 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 4133769..4133824 | 111..56 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 4126626..4126703 | 1042..966 | 250 | 93.7 | Minus |
| 3L | 28110227 | 3L | 4134454..4134502 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:54 has no hits.
FMO13436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:45 Download gff for
FMO13436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 41..1121 | 2..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:09 Download gff for
FMO13436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 41..1121 | 2..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:55 Download gff for
FMO13436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ens-RB | 41..1121 | 2..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:55 Download gff for
FMO13436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4126762..4126931 | 799..966 | 98 | <- | Minus |
| 3L | 4126989..4127162 | 625..798 | 99 | <- | Minus |
| 3L | 4131121..4131236 | 509..624 | 100 | <- | Minus |
| 3L | 4131750..4131889 | 369..508 | 100 | <- | Minus |
| 3L | 4131956..4132212 | 112..368 | 100 | <- | Minus |
| 3L | 4133769..4133822 | 58..111 | 100 | <- | Minus |
| 3L | 4134454..4134510 | 2..57 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:09 Download gff for
FMO13436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4126762..4126931 | 799..966 | 98 | <- | Minus |
| arm_3L | 4126989..4127162 | 625..798 | 99 | <- | Minus |
| arm_3L | 4131121..4131236 | 509..624 | 100 | <- | Minus |
| arm_3L | 4131750..4131889 | 369..508 | 100 | <- | Minus |
| arm_3L | 4131956..4132212 | 112..368 | 100 | <- | Minus |
| arm_3L | 4133769..4133822 | 58..111 | 100 | <- | Minus |
| arm_3L | 4134454..4134510 | 2..57 | 93 | | Minus |
