FMO13438.5prime Sequence
1113 bp (1010 high quality bases) assembled on 2013-02-11
> FMO13438.5prime
CAGTCGACATGTCGATTCGGTTGGTAGCACTCCTGGCATTGTTCGCCGCC
TTGGCGCATGGCAAACCCGGATACGGTCCCGGAGAGCAGGACTGGGGCTA
CGTAGATGTGCGTCCCGGTGCCCACATGTTCTACTGGCTGTACTACACCA
CCGCCAATGTTTCGAGCTATACCGAAAGACCATTAGCCATTTGGCTCCAA
GGAGGTCCCGGTGCCTCTTCGACGGGGTATGGAAACTTTGAAGAACTTGG
GCCCGTCGATTTGTACGGAGATTGGCGCAGCTGGACCTGGGTGAAGGACA
TGAATGTCCTCTTTATTGACAACCCCGTAGGCAGTGGTTTTAGCTACGTG
GACAACACGGCCTTTTACACGGCCACCAATAAGGAGATCGCTCTAGATTT
GGTTGAGCTGATGAAGGGATTCTATACCCTGCATCCAGAGTTCGAGGAGG
TGCCGCTGCATATATTCTGCGAGAGTTACGGTGGAAAGATGGCGCCGGAG
TTTGCACTCGAACTGTACTACGCCAAGAAGCGTGGTGAGGTCAAGAGCAA
CCTTACCTCGGTGGCTTTGGGGGATCCATGGACCTCGCCCATCGACTCCG
TGCTCGCATGGGGACCTTTTCTCAGAGAAATGGGAATCGTGGACCACGCG
GGATACAATGCCATTCAAGAGGCAGCGAACTTCACGGCTCAGTTGGTGGA
GGAGGAGCGATGGATTCAGGCCACCTATCAGTGGGGCAACACCCAGTGAG
AGGTGATGAAAGCCTCCAAGGGTGTGGACTTCTACAACGTGCTGAAGGAG
ACAAAGGGTGGTCTCTACCAGAGATCAAAGGCCTTGACCTCCGAAGAACG
TCTGTATCGCACCATGGTGAAATACGATATTGATGAGATCGAACCAGGTA
CTGGAGGATCTGATGCGGGGCCCGGTGGCGGAAACCCTGGTATTACTTCA
ATGTCTTCTGGGATCGCAGGTGGGACCACTTTTGACATCCTCGACCGACT
TCCTTGAAGCCAGTTCTCCCATTGTGAACGATTTGCTGGAAAAGACCTCC
TCTGAAAGCTCGACGTATTCTCCCGTGGACCAGCAATTTGATTTTGCTCT
CACCTCGGCAACG
FMO13438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-RA | 1382 | CG32483-RA | 1..1076 | 9..1078 | 4870 | 97.5 | Plus |
| CG3344-RA | 1480 | CG3344-RA | 175..709 | 78..612 | 890 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 689174..689960 | 846..60 | 3920 | 99.9 | Minus |
| 3L | 28110227 | 3L | 686821..687355 | 612..78 | 890 | 77.8 | Minus |
| 3L | 28110227 | 3L | 688971..689122 | 990..845 | 400 | 93.4 | Minus |
| 3L | 28110227 | 3L | 690029..690081 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:33 has no hits.
FMO13438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:00 Download gff for
FMO13438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1078 | 9..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:36 Download gff for
FMO13438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1078 | 9..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:16 Download gff for
FMO13438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1078 | 9..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:16 Download gff for
FMO13438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 689174..689959 | 61..846 | 99 | <- | Minus |
| 3L | 690030..690090 | 1..60 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:36 Download gff for
FMO13438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 689174..689959 | 61..846 | 99 | <- | Minus |
| arm_3L | 690030..690090 | 1..60 | 95 | | Minus |
