FMO13440.5prime Sequence
1115 bp (1021 high quality bases) assembled on 2013-02-11
> FMO13440.5prime
CAGTCGACATGTTGCTAAGATCATTTCATTATATTCTGCTGAACTGGATT
TTATTATTCCTATTCACAGTTTGCAAAGCAAAGAAAGCCGAAAATGATGT
AGTACAGGAAGTAATATACTCAAATTCCATTCGAGCCCTGTCTGAACTTC
GCGAGATTGAGAATTCCTATATGGAGCATTTAAACAACTATGTTAGCTTT
CTGCAACAAAAAATCAAAACTCTCAGAATTTTTATTAATTCTTTAACTCC
GAATTATTTGGATCACAAGGTGGATCGATATAAATATGTGTCCAATCCCC
TAAATTCCTTTGGACTTTTAAGGCGGGCTCATCAAGATTGGCCCAAGTTG
ATTGCTTACTTAAAGGATCAAGGAAATATAAAAGTTGACATCGAGGAAAT
GAATAAGCTAATCAATCGTACACCCCACGCAAATGATATGGAAGAGGCCC
TAATGGGAATGGATAGAATAGAACACTTCTACGACCTGAAGTCATCGGAT
ATGGCCCAGGGTCTTGTGGCAGGTCAACAGCTAAGTTCGCGAATGTCAGC
TTCCGACTGCTTGGCTTTAGCAGACTATATGTACAAACGATCAGAATTTA
GACGTGCGGCTGAATGGTATCGAATAGCTTTAAGTGTCTTCACCAAACCA
AAAAATAATATTGCATTTAAGTTCTATGCTCCAAAACGAAAAGAGCTCGA
AAAAATGTTTGTCATAAGTCGGCTTCAAGAAGGTTCCGTTGAAAACTTAA
CTGACTGTCTGAAGGAACTTTCTCAAGACCCGAACAATTCATTGGTGCAT
CTAAGGCCAAGGAAATCGCCCACTATGATTGAACAGGGCTGCCAGGGAAG
TTTCCACCAGGACCTCAACTAGTGTGTCGCTATAATAGCACCACCACTCC
ATTTATGCGATAGCTCCTCTAAAGGAGAGAGATCAGCAGAGACCCACTTA
TCTGGTATATCACGACGTGATCTATGACAGTGAGATAGCTCAGTTGACGA
TGTGACCCGAGAGAAATGATTCTGGGCACCACCACAACTATACGACTCGA
TCGGTGATCGTCTCTTCATAGGTACGACGACGATGGCGAGTTGGACAACG
TTGTATTCGTATGGC
FMO13440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34345-RA | 1777 | CG34345-RA | 12..1081 | 9..1066 | 5045 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6624134..6624459 | 731..1048 | 1235 | 96.9 | Plus |
| 2L | 23513712 | 2L | 6623123..6623343 | 9..229 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 6623883..6624082 | 534..733 | 1000 | 100 | Plus |
| 2L | 23513712 | 2L | 6623404..6623558 | 230..384 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 6623679..6623831 | 383..535 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:39 has no hits.
FMO13440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:02 Download gff for
FMO13440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 1..1119 | 9..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:40 Download gff for
FMO13440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 5..1130 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:20 Download gff for
FMO13440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 5..1130 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:20 Download gff for
FMO13440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6623116..6623343 | 1..229 | 98 | -> | Plus |
| 2L | 6623404..6623558 | 230..384 | 100 | -> | Plus |
| 2L | 6623681..6623831 | 385..535 | 100 | -> | Plus |
| 2L | 6623885..6624081 | 536..732 | 100 | -> | Plus |
| 2L | 6624136..6624530 | 733..1103 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:40 Download gff for
FMO13440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6623116..6623343 | 1..229 | 98 | -> | Plus |
| arm_2L | 6623404..6623558 | 230..384 | 100 | -> | Plus |
| arm_2L | 6623681..6623831 | 385..535 | 100 | -> | Plus |
| arm_2L | 6623885..6624081 | 536..732 | 100 | -> | Plus |
| arm_2L | 6624136..6624530 | 733..1103 | 93 | | Plus |
