FMO13441.5prime Sequence
1115 bp (1023 high quality bases) assembled on 2013-02-11
> FMO13441.5prime
CAGTCGACATGGTGGTCATTAAGAACGAGCAGAATATCTCGGTGCCCGAG
TATCTCAACGAGCACTTCTTCACAGAGACCCTGGAGGAGGGTTTGCGGGA
GTCGAAGGTGACCCTGAAGGAGATCAATTTTGCGTGGGGCAGCAATCCGG
GGGACAACTATTGCTCGGCTATCTATCGTGTCGGAGTCTCGTTCGCTAGA
TGGGCCGACGGTGGGGAATCCCCGGTGACGGAGCAGCTTTCGCTAATTGT
GAAGACCATTCCGATCACCGAAGCCACTCAGTTTCTGGAGGATGTCTGTG
TGTTCATCAAGGAGAAGCAGACCTACACTGATGTCTTGCCGCGATTGGAT
ATCCTCAGCCGTGGCGACACATTCGGAGCAAAATACTATCACTCTGTGAA
GACTCCGGTGCAAACGATCGTGTTCAGTGACCTCACGGTAGAGGGATTCA
AGGTGGCCTCGCGTGAAAAAGGCCTGGACTGGAACCACGCCTCACTCATT
CTTCAGCAACTGGGAAAGTTCCATGCCACCTCCATGGTGCTGGCCAAGAA
GGATCCCGCTATTGTGAAGCAATACACGCGTGGCATGCTCAGCGAGGACA
TCCTGATGAAGAGCGACACCTTCGAGCAAATGTTCGGCGGCTTCCTCAAG
GGCCTCATCAAGAGCTCAGCGAGCTGGGCCGGCTACGAGAAGATTAGCAA
GCACTTGCAGCGCCTTATGGACAACTTCCGGAACGTGTGTGCGGATGCGC
CCAGGCCGAGGAAGGGTGATCGCTACGTGGTGCTCAACCACGGGGATTTG
TGGACCAATAACTTCATGTACGGATACGATACGCTTCACAGCCGGACGTT
CCCACGCGTGCCATCTTCGTGGACTTCCAACTCAGCTTCTATGGCAGTCC
GGCCTGCGATCTGAACTTCTCCTGAACACCAGCATCAAGCTGCAATTGCT
GCAGGAGCGCCGCGAGGAGCTCCATCAAGGTGTACTATGCATCCTTCAAG
GATGCTCTGGGAGTACGCCCGCTTCCAGGAATTTCCAGCTTGAAGGATAT
CTGCAGTACGAGCTGGCGCCAGCCGCGAACCTATGGACTTTTCGGCTATG
GTTGCCTTTCCGTCC
FMO13441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9498-RA | 1514 | CG9498-RA | 69..1170 | 4..1108 | 5145 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6349778..6350292 | 1065..550 | 2205 | 97.7 | Minus |
| 2L | 23513712 | 2L | 6350588..6350966 | 382..4 | 1880 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6350354..6350523 | 552..383 | 850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 590..640 | 906..954 | 114 | 74.5 | Plus |
FMO13441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:04 Download gff for
FMO13441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 60..1166 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:42 Download gff for
FMO13441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 66..1172 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:21 Download gff for
FMO13441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 66..1172 | 1..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:21 Download gff for
FMO13441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6349735..6350290 | 552..1111 | 96 | <- | Minus |
| 2L | 6350355..6350523 | 383..551 | 100 | <- | Minus |
| 2L | 6350588..6350968 | 1..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:42 Download gff for
FMO13441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6349735..6350290 | 552..1111 | 96 | <- | Minus |
| arm_2L | 6350355..6350523 | 383..551 | 100 | <- | Minus |
| arm_2L | 6350588..6350968 | 1..382 | 99 | | Minus |
