FMO13444.5prime Sequence
1151 bp (1051 high quality bases) assembled on 2013-02-11
> FMO13444.5prime
CAGTCGACATGTTTGACCAACCCCCTGAAAACGAACTGCAGAAATCACAT
GACCACAATCCAGGCGCACTAAGCGAGCATCAACTGCGTGTCCAAGCTTC
GCTTCAGCGGCTAAATATTCCCGACTGGTTCCGTCATTACAACAAAGGCC
CCGAAAAGGCAGCAGATGGCGAAAACGCATGCACAAGTGCGACTGGCGGT
GGTTACCGACCTGGCAACTTCACCCGCAAACGCGCACAGGAATCGGGTCG
CTGGCAAGGGCTCAACTCAAAGACGACTTCCCTCAGCTCGCTGGGATCTC
AACGCTCCGACCGAAGTCCTTTGTTGATGAGTCCCTCAGCGCACAGTCAT
CACGGCGGCCAAAGCTCCTATTCATGTGGGTCGACGACAATTCACGGTCC
GGCACCTGTACAGATAGGCATGGGTGCAACTCGCTGGTCAACCTCTCATC
TGAATTCCACTCAGATGTCTCCCGGTGCCTCGCAGCGCGGAAGCTTTACG
CGCGGCGCCCCCATTAATAGCAGCTTTATATCTGTGGCCAGTGGTAGTGG
CTTGTTGCGCAATTCCTACCGACAGCCGTATTTGGGTTGGCGCAGCACAG
AGAAGCTCTCCCAACGAACTCCCCACGAACGTCTGGCCAATTCGCTGCTA
ACCCAACGGACAGCTCCGCCCTCCACACGGGCGGGCAATGAAACCCGCAC
CTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGAAGTCACAT
CCGCCATCGTTCACTTCGTGAACGACCAGCAGCAGTCCCAACATCCGCGG
AGCCGTTCTACCAGTCCAAATTCAAGGTGCTGGCTGGAAAGCAGCTTTGT
TGGTACACGAACCCTGGACTCGCCGCAAACACCCGTCATTGACACAGTCC
TCCCGAATTGGACGAAAGCAGCAGCAGCTCCACCCGCACCAAGTGCATCT
GGATGTCGGTCTGTCGCTGTAGTCTCCGCTGGTCAGCTGCCACATCGCAT
GACGGAATAAATCGTATCGGCAACGGTGGCGGCACCCGGACGATCGTAAG
CAGCGCTCGCTAGAAGATGGTCTAGCCTCGCTATAGACTACCAACTACCC
CTTTTATCGGCCGAACAGCAATTCTACAAGCAGCTCACCTCCATGGCGCG
C
FMO13444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42748-RF | 4450 | CG42748-RF | 120..1255 | 8..1135 | 5300 | 98.5 | Plus |
CG42748-RL | 5823 | CG42748-RL | 120..1255 | 8..1135 | 5300 | 98.5 | Plus |
CG42748-RK | 9304 | CG42748-RK | 4979..6119 | 21..1135 | 5080 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22154798..22155408 | 21..631 | 3055 | 100 | Plus |
2L | 23513712 | 2L | 22156620..22156817 | 631..828 | 990 | 100 | Plus |
2L | 23513712 | 2L | 22158511..22158722 | 825..1032 | 860 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:45 has no hits.
FMO13444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:05 Download gff for
FMO13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42748-RF | 115..1262 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:44 Download gff for
FMO13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42748-RL | 115..1262 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:22 Download gff for
FMO13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42748-RL | 115..1262 | 1..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:22 Download gff for
FMO13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22154789..22155408 | 12..631 | 99 | -> | Plus |
2L | 22156621..22156815 | 632..826 | 100 | -> | Plus |
2L | 22158513..22158721 | 827..1031 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:44 Download gff for
FMO13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22158513..22158721 | 827..1031 | 98 | -> | Plus |
arm_2L | 22154789..22155408 | 12..631 | 99 | -> | Plus |
arm_2L | 22156621..22156815 | 632..826 | 100 | -> | Plus |