Clone FMO13444 Report

Search the DGRC for FMO13444

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:134
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42748-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13444.5prime Sequence

1151 bp (1051 high quality bases) assembled on 2013-02-11

> FMO13444.5prime
CAGTCGACATGTTTGACCAACCCCCTGAAAACGAACTGCAGAAATCACAT
GACCACAATCCAGGCGCACTAAGCGAGCATCAACTGCGTGTCCAAGCTTC
GCTTCAGCGGCTAAATATTCCCGACTGGTTCCGTCATTACAACAAAGGCC
CCGAAAAGGCAGCAGATGGCGAAAACGCATGCACAAGTGCGACTGGCGGT
GGTTACCGACCTGGCAACTTCACCCGCAAACGCGCACAGGAATCGGGTCG
CTGGCAAGGGCTCAACTCAAAGACGACTTCCCTCAGCTCGCTGGGATCTC
AACGCTCCGACCGAAGTCCTTTGTTGATGAGTCCCTCAGCGCACAGTCAT
CACGGCGGCCAAAGCTCCTATTCATGTGGGTCGACGACAATTCACGGTCC
GGCACCTGTACAGATAGGCATGGGTGCAACTCGCTGGTCAACCTCTCATC
TGAATTCCACTCAGATGTCTCCCGGTGCCTCGCAGCGCGGAAGCTTTACG
CGCGGCGCCCCCATTAATAGCAGCTTTATATCTGTGGCCAGTGGTAGTGG
CTTGTTGCGCAATTCCTACCGACAGCCGTATTTGGGTTGGCGCAGCACAG
AGAAGCTCTCCCAACGAACTCCCCACGAACGTCTGGCCAATTCGCTGCTA
ACCCAACGGACAGCTCCGCCCTCCACACGGGCGGGCAATGAAACCCGCAC
CTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGAAGTCACAT
CCGCCATCGTTCACTTCGTGAACGACCAGCAGCAGTCCCAACATCCGCGG
AGCCGTTCTACCAGTCCAAATTCAAGGTGCTGGCTGGAAAGCAGCTTTGT
TGGTACACGAACCCTGGACTCGCCGCAAACACCCGTCATTGACACAGTCC
TCCCGAATTGGACGAAAGCAGCAGCAGCTCCACCCGCACCAAGTGCATCT
GGATGTCGGTCTGTCGCTGTAGTCTCCGCTGGTCAGCTGCCACATCGCAT
GACGGAATAAATCGTATCGGCAACGGTGGCGGCACCCGGACGATCGTAAG
CAGCGCTCGCTAGAAGATGGTCTAGCCTCGCTATAGACTACCAACTACCC
CTTTTATCGGCCGAACAGCAATTCTACAAGCAGCTCACCTCCATGGCGCG
C

FMO13444.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42748-RF 4450 CG42748-RF 120..1255 8..1135 5300 98.5 Plus
CG42748-RL 5823 CG42748-RL 120..1255 8..1135 5300 98.5 Plus
CG42748-RK 9304 CG42748-RK 4979..6119 21..1135 5080 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22154798..22155408 21..631 3055 100 Plus
2L 23513712 2L 22156620..22156817 631..828 990 100 Plus
2L 23513712 2L 22158511..22158722 825..1032 860 98.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:46:45 has no hits.

FMO13444.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:05 Download gff for FMO13444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42748-RF 115..1262 1..1142 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:44 Download gff for FMO13444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42748-RL 115..1262 1..1142 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:22 Download gff for FMO13444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42748-RL 115..1262 1..1142 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:22 Download gff for FMO13444.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22154789..22155408 12..631 99 -> Plus
2L 22156621..22156815 632..826 100 -> Plus
2L 22158513..22158721 827..1031 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:44 Download gff for FMO13444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22158513..22158721 827..1031 98 -> Plus
arm_2L 22154789..22155408 12..631 99 -> Plus
arm_2L 22156621..22156815 632..826 100 -> Plus