FMO13445.5prime Sequence
770 bp (770 high quality bases) assembled on 2013-02-11
> FMO13445.5prime
CAGTCGACATGTCCAGCGACGCCAATACGGCCGTGCTGCGCAACTGCATC
CGCTTGCCGCTGGCGGAGGATGAGCTACTGGAGGTGACGGCCAAGGCCAA
GGATTATGCCATTATGCACGGCGCCGCCATGCGATCGAAGACGGCCTTCA
GTCCGGACTCGTTGAATTTCGCCCCCTTCGTGCTGGTGCCTTCCTCGTTT
CCGCGCAAGGAGTTCGAAAAGGCGGTGGCCCTACAGCCGATCATCAACCG
GCTGATGCACAATGTGGCCCACGACGAGGAGTTCATCACGACGACGCTGG
CGGAGACGATCAAAGTGGACGAGTTCACGGCCAATCTGTTCAACATCTAT
CGCAAGGTGCTGGCGCACGGATTCACCCAGAAAACATCGCTGGGGATGCT
GCGCAGCGATCTGATGCTGGAGTCCGGCTGTCCCGAGCTGTCGCCACGGG
CGCTGCGAACGGCGGCCGGTGAGGATCGTGGTCAGGATGCGGGCGCTGCT
GTGGGGCAAATAGCTGGAGCTAACGGAGCTGCAGGAGTCGGAACTGCCGC
TGGCACGGGCAGCAAGGAGGAGGAGCACAGGGAGGTCCAGCTAAGCCGGG
TCACCAAAGAGCCGGAACGGAGGGCGACCGGCGCCCAGTCCGCTTACTGC
TGCTGGAAGCAAGTCGAGATCAATACGATAGCATCGGGCTTTGGCCACTT
GCGACCAGCAAGTAAAACCATACAAAGATTGTTGCCTAGAGTTTTCATTT
GCGCAAGCTTTCTAGACCAT
FMO13445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GS-RG | 1337 | CG6835-RG | 165..909 | 8..752 | 3710 | 99.9 | Plus |
| CG32495-RE | 1337 | CG32495-RE | 165..909 | 8..752 | 3710 | 99.9 | Plus |
| GS-RI | 2151 | CG6835-RI | 314..1036 | 8..730 | 3600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17891586..17891934 | 379..727 | 1730 | 99.7 | Plus |
| X | 23542271 | X | 17901741..17902089 | 379..727 | 1730 | 99.7 | Plus |
| X | 23542271 | X | 17900616..17900828 | 168..380 | 1065 | 100 | Plus |
| X | 23542271 | X | 17890461..17890673 | 168..380 | 1065 | 100 | Plus |
| X | 23542271 | X | 17889990..17890149 | 8..167 | 800 | 100 | Plus |
| X | 23542271 | X | 17900145..17900304 | 8..167 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:48 has no hits.
FMO13445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:06 Download gff for
FMO13445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32495-RE | 156..919 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:46 Download gff for
FMO13445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GS-RG | 156..919 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:24 Download gff for
FMO13445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32495-RE | 156..919 | 1..763 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:24 Download gff for
FMO13445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17890461..17890673 | 168..380 | 100 | -> | Plus |
| X | 17891588..17891934 | 381..727 | 99 | -> | Plus |
| X | 17889981..17890149 | 1..167 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:46 Download gff for
FMO13445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17784014..17784182 | 1..167 | 98 | -> | Plus |
| arm_X | 17784494..17784706 | 168..380 | 100 | -> | Plus |
| arm_X | 17785621..17785967 | 381..727 | 99 | -> | Plus |
