FMO13447.5prime Sequence
1169 bp (1063 high quality bases) assembled on 2013-02-11
> FMO13447.5prime
CAGTCGACATGTCTCGTGTGCTTTCGTTAGCTCTGATCGGATTAGTGCTC
TGCCAGGGTTTAGCACAACTGCTGGATAAAAAGTGTCACGATCCAAAAAC
TTCAGAGAATATAAATTTCAATCATGGTGCAACTGAAACCGCACCCTGGA
TGGCAAGCATATACAAGAATAACCAATTTATTTGCGACGGAACGCTTGTT
CACAAATTGTTCGTCCTAACGGCCGCGAGTTGCATATCGAAAGATAGTCA
ACTGTACGTGCTTTTCGGGATGTACAACCAATACAGGGATGCATCACAAT
TCTTTAACAACGAACAATATGGAGTGGCGGTTGCTTTGCAACATTCCAAT
TTCCGCCCAAACAATGGCGTCAACGATATAGGCCTTTTAAGACTTTACGG
TGAAGTGACGCATTATGCCCACATCCGCCCGATTTGTATAATATTAGATC
ATGTGGTAAAGTCAGCACCATTTGAAAGGTTTGAGGGCTTTGGATGGCAA
CAACAAGGAACAGAAGCATCCAGCCAAGTGAGGCAGACCGTATATCTCTC
TCAGAAAAAACCATTTGAGTGCCATCGAAATGGTCAGTTGTTGCCCATTA
ACGAGGGGCAATTCTGCGCCGGCAATAGGGATAGAAGTTTCTGTAGAAGT
AACTCCGGCAGTCCGTTGACAGCTGATTTCACCTACGGCGTAAAAAATAT
CACCGTTCAGGTTGGATTGGTGAGCTACGGCAGCGAGTTGTGCAGCCCAA
CTAGCGTCTATACAGATGTTGTCGCCTTCAAGGACTGGATATATAATACT
GTCAGGAATTTCGAAACTAAAGGTGATCAGGTTGTGTACGAAGAATGCAG
GAGCAACTGGGCGGAGGATGTCCTTGTTCGCCTGTGGGAGGTATCTCTGC
ATCAGATACTTTCTCTGGCGTGCTTATTACGAATAGATTTGTCTTGACGG
TGCCAGTGCTTTCCCTAACATTCCTTTAGTATGAAGGTGGAAACCAAATA
TCTCAAAGTTTCGACGTGGAATCGATCCATACCCATCCCAGATTCACGCA
TTCATCATGACAAACAAAAATTGCAATGCTAAACTAGCTCACGGAGGTGC
AAACCTCAGATCTGTCCAGCAATCTGGCATTGTTCCAAGGTCCAACTGGC
CAGAGTTAACTCACTGTGG
FMO13447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33465-RC | 1610 | CG33465-RC | 30..1178 | 9..1152 | 5275 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15819948..15820468 | 936..417 | 2555 | 99.8 | Minus |
| 2R | 25286936 | 2R | 15820887..15821085 | 207..9 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 15820557..15820720 | 417..254 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 15819697..15819772 | 1057..983 | 330 | 98.7 | Minus |
| 2R | 25286936 | 2R | 15820769..15820817 | 256..208 | 245 | 100 | Minus |
| 2R | 25286936 | 2R | 15819846..15819892 | 981..936 | 185 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:24 has no hits.
FMO13447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:56 Download gff for
FMO13447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 11..1123 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:28 Download gff for
FMO13447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 30..1142 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:11 Download gff for
FMO13447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 30..1142 | 9..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:11 Download gff for
FMO13447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15819844..15819892 | 936..982 | 95 | <- | Minus |
| 2R | 15819949..15820467 | 418..935 | 99 | <- | Minus |
| 2R | 15820557..15820720 | 254..417 | 100 | <- | Minus |
| 2R | 15820772..15820817 | 208..253 | 100 | <- | Minus |
| 2R | 15820887..15821085 | 9..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:28 Download gff for
FMO13447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11707349..11707397 | 936..982 | 95 | <- | Minus |
| arm_2R | 11707454..11707972 | 418..935 | 99 | <- | Minus |
| arm_2R | 11708062..11708225 | 254..417 | 100 | <- | Minus |
| arm_2R | 11708277..11708322 | 208..253 | 100 | <- | Minus |
| arm_2R | 11708392..11708590 | 9..207 | 100 | | Minus |
