FMO13448.5prime Sequence
1151 bp (1046 high quality bases) assembled on 2013-02-11
> FMO13448.5prime
CAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTGCTCGCAAG
CGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTTGGCAATGA
TTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCTCCCCAAGA
AATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGCGGAAAAAT
CCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCAGAACATAA
GGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCTATCACCGG
TATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGCAATCGGAT
GTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCCAGACGCAC
ACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGTTTCACCGA
CTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCCAAAAAAAG
AGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATGGAGGTCTC
ATTGCCAAGCATTCAGAACAATGAGCACATTAGCAGACGGTGGACGTTGG
CCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATCTGGTATCT
GCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCTGAAGACGA
GGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAAATATTTTTGAT
AACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGGCGAGATCCA
GATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCATCTGTTCAAGGAGT
TAGCATCACGCAATGGGGATAGATGAGAATGATATAACGGTGGATATGTA
CTATAACTTCGTTGGACCTGAGGATACGCCGCACAGCATTGGTCTCAAAT
CATTTCATACGCTCACTGTCATCCAACAAAGAGTCACATAATAACAACGT
GGCTGCTAAATGACTACATCCAGAAGCCTCTTGCCGAAACCTAAGAAGTT
CAGTTAAGGTACGCCGATAATGAGCATCCCTTGGGTGATACCATGAGAAA
CTGATAATTCCAAATCTAATTATTACTGGTCCTGAGGATGGAACTGGATC
C
FMO13448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-RC | 1494 | CG4449-RC | 77..1236 | 9..1151 | 5060 | 96.9 | Plus |
| CG4449-RB | 1671 | CG4449-RB | 254..1413 | 9..1151 | 5060 | 96.9 | Plus |
| CG4449-RF | 1491 | CG4449-RF | 77..1233 | 9..1151 | 5005 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23250606..23251104 | 563..65 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 23250023..23250202 | 965..785 | 855 | 99.4 | Minus |
| 3R | 32079331 | 3R | 23250425..23250540 | 679..564 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 23250256..23250363 | 786..678 | 495 | 99.1 | Minus |
| 3R | 32079331 | 3R | 23251167..23251224 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:27 has no hits.
FMO13448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:58 Download gff for
FMO13448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1385 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:31 Download gff for
FMO13448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1385 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:12 Download gff for
FMO13448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1385 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:12 Download gff for
FMO13448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23251167..23251228 | 1..66 | 93 | | Minus |
| 3R | 23250023..23250201 | 786..965 | 99 | <- | Minus |
| 3R | 23250257..23250363 | 678..785 | 99 | <- | Minus |
| 3R | 23250427..23250540 | 564..677 | 100 | <- | Minus |
| 3R | 23250606..23251102 | 67..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:31 Download gff for
FMO13448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19075745..19075923 | 786..965 | 99 | <- | Minus |
| arm_3R | 19075979..19076085 | 678..785 | 99 | <- | Minus |
| arm_3R | 19076149..19076262 | 564..677 | 100 | <- | Minus |
| arm_3R | 19076328..19076824 | 67..563 | 100 | <- | Minus |
| arm_3R | 19076889..19076950 | 1..66 | 93 | | Minus |
