FMO13449.5prime Sequence
1134 bp (1031 high quality bases) assembled on 2013-02-11
> FMO13449.5prime
CAGTCGACATGATGGAGTTCGGGAAATCGTCGGATCACTCCCAGCACAGC
GCTTCCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGCGATCTGGC
CGTCACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCACCAGTTCGG
ACAACAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGTCCTCGGTG
GCGGACACCACCTTTGAGCCCACCATCGACATGATGGTCAACGACTTTGA
CGACGAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACATGGAGGCGC
ACAGTGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCGAGATGCCC
ATCGAGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCGCCGGCAAT
GAGCAGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACGTAGGGCCA
CAAAGCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACACGTCGACC
TCCACTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGCATAGACCA
GGAGGAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACCCCCAGAAT
CAGGAGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGTATGAGGGG
ATCAAGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCAGATGAATC
CTTCGTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAGATTCACTC
CACTGCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGGAGGAAAGC
GAATCCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGTCACGACTA
TCATGCTGAGATCCCAGAGGGGCTGTCGCAATATGGCGATATATTGCCAT
ATGAGAACGAGGATCAGTTGATCTGGGAGCCCAGCCAGTCAGCGAGGCGC
GAGGTTGAGGAATATCTGGGCCAGAATACAGGAAACCCGATCGAATAGTT
CCGCGGATGACGGGTCAGAAGACTACGGCGGGGCGAGGAAAGGCGCAGCT
AAGGTGCTACTATCGAACCGCCGGCCTCCCATTATACAGCTCCAGCCACG
CCTTCGAGGGCTTCGGCTTGCCACATGGGCCTTG
FMO13449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-RC | 2204 | CG1620-RC | 87..1196 | 9..1125 | 5180 | 98.2 | Plus |
| CG1620-RB | 2272 | CG1620-RB | 87..1196 | 9..1125 | 5180 | 98.2 | Plus |
| CG1620-RA | 2529 | CG1620-RA | 206..1315 | 9..1125 | 5180 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7495526..7496261 | 744..9 | 3680 | 100 | Minus |
| 2R | 25286936 | 2R | 7495100..7495461 | 1112..745 | 1215 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:57 has no hits.
FMO13449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:09 Download gff for
FMO13449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1321 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:52 Download gff for
FMO13449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1321 | 9..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:30 Download gff for
FMO13449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1321 | 9..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:30 Download gff for
FMO13449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7495082..7495461 | 745..1130 | 94 | <- | Minus |
| 2R | 7495526..7496261 | 9..744 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:52 Download gff for
FMO13449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3382587..3382966 | 745..1130 | 94 | <- | Minus |
| arm_2R | 3383031..3383766 | 9..744 | 100 | | Minus |
