FMO13450.5prime Sequence
1111 bp (1022 high quality bases) assembled on 2013-02-11
> FMO13450.5prime
CAGTCGACATGGCGGCTCGCCTGGAAATCACCGTTAGCTTGGCGCTCGCT
GCAACGCTACTGTGCAGCATATTGGGTCATTGCGAAATGTCCGTTTACCC
AGGATTGCGCCGCCGACCCATTCAGCCGCCTGTGATGGATCCGCAGAGTG
AGCAAGAGTATGCTTTTCTGGCCCAGATGATGGAGCAGTATGCCCGCCGT
CGGCTGCAGCAGCAGTTCGACCAACAGCTGCACGAAATCAACCTGAAGAT
GGATCGTCAGCGGCAGCTCTTGGAGCAGGAGCGGTACCGCCAGCGGCAGC
AGGAGCTCCAGGTACAGCGCGAGGCGGAGGAGGACTACGAGTCCAACGGA
AACAACCTGAACCAGCAGTACGACCAGTACGACAACGCGGAGGCAGAGGC
CAGCTACGGCAGTCCGATGGAGGCAGTCTCTGATCTCCAAAGTCCTCCAT
TGTACCTGCCTCGCCTGCCCAACCTACCACCCTTGCCCAGCCTTCCGAAT
CGGCCCAGCCTGGGCAACTCCCCGAACAGGAACAGTGTGCTCCGCGAACG
GATTCCCTTTGCTGTAGGTCCCAGCGACGCTCGCTTCTTTGACAACCCGA
ACGACCCTTCGGGGGAGCTGGATTCCCGGGCGCTGGAGGACTACGAGGAG
TATGCTCCCATTGAGCCCACAACCGAAGTAGCCACCACCGCCAGTAAGAC
CAAGATCGATACGCCAGTACCGGCTCCCGTGCCCGTTGAGCCGCCCAAAC
TGCTTGACGCCGCCAACACCAACTTCCACCGCATCAATCCCCCAGTCCGC
CGCCGCCGCAGCCGTGGCGGGAGTGAATATTCCCCAGAGCAAAGAACAAC
CACCCCATGAACTTAACGCACTGATCAACAAGCTGCAAAGCAAAGCAAGC
GCCCTCTCATTTGACGCTGGTCAACGGAGTGATTCCAGTCAGAGCAGATT
GTGCTGCGCCAGCACCTGGCATGAACAGCGAGATGGGGGGTGTACATAGT
GCCCTAATAGCGGGGTTAGTGCAGCGGTGAACGTTTGGGCTCCTTGTCCT
CCGAATAACTTGGTTTCCATAACGAACACAGGCTACAACGGAACGGTGAA
ACACCCTGTCC
FMO13450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44247-RB | 3629 | CG44247-RB | 514..1580 | 9..1072 | 5005 | 98.5 | Plus |
| CG44247-RA | 2696 | CG44247-RA | 514..1580 | 9..1072 | 5005 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24878136..24879104 | 100..1064 | 4285 | 98.5 | Plus |
| 2R | 25286936 | 2R | 24877204..24877298 | 9..103 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:47:00 has no hits.
FMO13450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:12 Download gff for
FMO13450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf-2-RB | 487..1546 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:54 Download gff for
FMO13450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44247-RA | 504..1563 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:31 Download gff for
FMO13450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44247-RA | 504..1563 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:31 Download gff for
FMO13450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24877194..24877297 | 1..102 | 96 | -> | Plus |
| 2R | 24878139..24879094 | 103..1054 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:54 Download gff for
FMO13450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20764717..20764820 | 1..102 | 96 | -> | Plus |
| arm_2R | 20765662..20766617 | 103..1054 | 98 | | Plus |
