FMO13451.5prime Sequence
1131 bp (1043 high quality bases) assembled on 2013-02-11
> FMO13451.5prime
CAGTCGACATGATTGGCAAGATGCAAACGAAGGTGTTTCTGCTGTGCCTG
GTACTTTCCTTGGGAACATTTCCGACCGCTCAGGGACAATCGGATGCCGG
GAACGATGAGGAGCAACCACTCCATTTGACCAACGACGCGTCTTTCTTTC
AGCCACATTTGCACGATCGACGACTGGGTCGCCAGTTGATCGAGGATCTC
GCCGAGAGCCAGAGCTCGGCCAGCAGTGTCAGCAGCGGCAGCAGTCAGTC
CGGCTCCGCCTACGAGGATGACGATGACGACGTCGAGGGTTCCAGTGAGT
ACTACGATAGCGACGAGGAACAGTCCGAGGGCAGCAACGAATCCCTGCCT
CGTTTGCTCTCCCAATCCACCTTTAATCGCATCTCTGAGACCTTGGGAGC
GCTCAACCATGTGGGGCACATGCTGGTGGACATAACTCGCGGTGGACAGG
ATCAGGCCAAAATGGAGGGGGCGGAGAAGAGTGAGGATACAAGCCAGGAC
AATAGTCAGTCGGGTGGATCGTCCAGCGCAACCGCAAGTGCTTCCAGCAC
CACCGAAGTGGTTCCCTCTTCCACATCCTCCCCACGAGGAAATTCCGAGC
AACTGCCAGGAGTCTCAGACAAACTTATGGATCCTCTACCGATTACACTC
TCTGCCAATAGTTTACTACCAGCTGGCAAGCCTGCGAATCTGAGTGTCAT
CCAAGTGGCAACTAAAAGAATCGGTATGGATGACTCTGCTCCCATGTTTG
TGGAGAACAAGGAGCTGAAGCTAAAGAAGAAAAAGAAGAAGAATAAGAAC
AAGCAGAAGGTCAAGAAGCCCAGTGAAGAACGTGTCCTGGTTCCGGTAGC
CCAGGGTGCTCAGCAATCGCAGCAGAGATCAAGATACCCACTACTCCGCG
CACCACAACTACGTCCACCACACAGAGGCACTATTACTCTGACCCCATTG
GATCAGTTGGCAGAGGCTAGTGATGAGCAGGACCGGGGAAGATGTGAACT
ACTGCAACGCCAGTGAAGGCGAGGACGTTGGCGAGGATCTCAGCAGTTGT
TCCGCTCTGCTGCTGAATCCCAGCAGCCTGGAGAGAGTCCTGGGCTTCAG
AGTTCCTTAGGGCGGGCGTGTGCTGCCAATT
FMO13451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7432-RB | 2921 | CG7432-RB | 549..1680 | 9..1127 | 5110 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19668354..19669304 | 138..1077 | 4160 | 98 | Plus |
| 3R | 32079331 | 3R | 19668204..19668291 | 51..138 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 19665555..19665597 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1105..1148 | 1070..1027 | 112 | 72.7 | Minus |
FMO13451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:13 Download gff for
FMO13451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 454..1596 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:56 Download gff for
FMO13451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 543..1685 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:33 Download gff for
FMO13451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7432-RB | 543..1685 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:33 Download gff for
FMO13451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19665549..19665597 | 1..51 | 92 | -> | Plus |
| 3R | 19668205..19668291 | 52..138 | 100 | -> | Plus |
| 3R | 19668355..19669361 | 139..1131 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:56 Download gff for
FMO13451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15491271..15491319 | 1..51 | 92 | -> | Plus |
| arm_3R | 15493927..15494013 | 52..138 | 100 | -> | Plus |
| arm_3R | 15494077..15495083 | 139..1131 | 97 | | Plus |
