FMO13452.5prime Sequence
1031 bp (1013 high quality bases) assembled on 2013-02-11
> FMO13452.5prime
CAGTCGACATGAGTCGACATGAAGGTGTCAGCTGCGATTCATGTCTCAAG
AGCAACTTCAACGGACGGCGCTACAAGTGCTTGATCTGCTATGACTACGA
TCTGTGTGCCGATTGCTACGAGGATGGCGTCACCTCCACGCGCCATTTGG
TCGAGCATCCCATGCAGTGCATCCTCACCCGCTCCGATATCGAGCTGTAC
TTTGGCGGCGAGATGCTAGCCTCCGACCAGCCGCAGAGCTTCACCTGTCC
CTACTGCAAGAAGATGGGCTTCAGCGACGCCACCCTGCTGGAGCATGTCT
CCGCCGAGCACACGGAGACCAGTCTAGAGGTGGTCTGCCCCGTATGTGCC
GGTCTGCCGGGCGGCGAGCCGAATCTAGTCACAGATGACTTTGCCGGTCA
CCTCACCCTGGAGCATCGCCAGGGACCGCGCGAGCTGATTTCCTTTCTGG
ATGAACCCTCGGCCATCCGTCATGGCGGTGGAGTGCGTCGCATCCCAGGA
CGCACCCTCGGTGGACCACGGACGCGTCGGTCCAACATGCACTTCAGTTC
GTCTAGCGGTCTATCAGCCTTGTCGCCTTCGGGACGGGAATCGGTGGATC
CCATTGCGGAACTGTTATCGCAGCTTTCCGGCGTGCGGAGGGGCGGACCG
CCCACATCTCAGCTGCAGCAGCTACAGATGCAGATGCAGTTGGATCGCCA
GCAGGTGACGGCATCGCGCCAAATCGATCGGCTGCCAAGGCGTGCGCATC
CCATAGTCTCAACATCGAACTCGAATGCCGCCATGGCCGAGGTGATCAGC
GGCGGAGCGGGCGGCAGTGGAGGCAGTGGCGCAGTTGGAAGCGGCAGTGG
AGGCGGCAGCGGGGCAACTGCTCCGCCCACCTGCGCACACTGAGTGGCCG
GTGACAGCCAGCTTCTCGACATCGGCCAGCAATCATTTCGCAAACTCAGT
CGAGTCTGGCCGCCAACGCTCAATGCCAGAGAAGCGATCGGAACGAGAGC
AGTGCAGGCAGCAATGTCCTGGGCATTCATC
FMO13452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11984-RI | 2545 | CG11984-RI | 355..1376 | 9..1026 | 4965 | 99.4 | Plus |
| CG11984-RH | 2445 | CG11984-RH | 255..1276 | 9..1026 | 4965 | 99.4 | Plus |
| CG11984-RG | 2488 | CG11984-RG | 298..1319 | 9..1026 | 4965 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9012837..9013263 | 449..23 | 2135 | 100 | Minus |
| 3R | 32079331 | 3R | 9012044..9012305 | 711..450 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 9011673..9011950 | 984..710 | 1165 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:06 has no hits.
FMO13452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:15 Download gff for
FMO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..1323 | 9..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:58 Download gff for
FMO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..1323 | 9..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:35 Download gff for
FMO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..1323 | 9..1031 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:35 Download gff for
FMO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9011557..9011604 | 984..1031 | 93 | <- | Minus |
| 3R | 9011674..9011949 | 711..983 | 98 | <- | Minus |
| 3R | 9012045..9012305 | 450..710 | 100 | <- | Minus |
| 3R | 9012837..9013261 | 25..449 | 100 | <- | Minus |
| 3R | 9013316..9013331 | 9..24 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:58 Download gff for
FMO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4837279..4837326 | 984..1031 | 93 | <- | Minus |
| arm_3R | 4837396..4837671 | 711..983 | 98 | <- | Minus |
| arm_3R | 4837767..4838027 | 450..710 | 100 | <- | Minus |
| arm_3R | 4838559..4838983 | 25..449 | 100 | <- | Minus |
| arm_3R | 4839038..4839053 | 9..24 | 100 | | Minus |
