FMO13455.5prime Sequence
1142 bp (1023 high quality bases) assembled on 2013-02-11
> FMO13455.5prime
CAGTCGACATGAGCTCCGTAAATAAAATAAAGCTTAACGAAAACAACAAG
ATGCACTCTTTTGGGAACTGGGAGCGGTGCCGGAATCTGGGAGAGGGCGG
ATTCGGCCTAGTGATCCATTGGCGAAACCGAACAACGGGCCGTGAAATTG
CCACCAAGCACATAAAGGAGATGGGGGCCCTGAGTGCCGATCAGCAAGTC
AAGCTCAGCGAGCGTTGGAACAAGGAGCTGAACTGGTCTCGTCAGTTTAA
AAACTTTCCCCATATTGTGGCTGGCGTGGACATCGAGGATCCGGACTTTT
TGGAGTACCTGAATGGCATGTTTAGTGCCAAGTTGCCTGTTATTGTGCTG
GAATACTGTAACGGTGGAGACGTGAGGAAGCGTCTGCAGAGCCCGGAGAA
TGCTAATGGTCTGACGGAGTTCGAGGTGCGGCAGATACTGGGAGCCCTAC
GTAAGGCCCTACATTTTCTGCACTCGCAGTGTGGGATTTGCCACCGCGAT
TTGAAGCCGGACAATATAGTAATCCAACGTGGAGTTGATGGCAAAAAAAT
CTATAAGCTAACCGATTTTGGACTCGCCCGAGGAACTCCCGACCAGACCA
TGGTGCAGAGCGTGGTGGGCACCCGACATTACTATGCCCCAGAAGTGGTG
GAAAATGGTTTTTACAACTCGACCGTGGATTTATGGTCCTTCGGAGTAAT
TGCCTATGAGCTGGTCACTGGTGAGCTGCCCTTCATCCCCCATCAAACCC
TTAAAAACATTATACTCAATCTGATAAAAAAGCCCGCCAAATGCATTGCT
ATCACAGAGGATCCGGAGGATAACACTCGTTTCGTGAATCAGTTTGAACT
GCCACAGACGCACCATCTGTCGCGGCCCTGGGCTGCTCAGTTCACCAAAT
GGCTGGCAGCCCGTTAAACTCAAACTACAAGAACGCGGTCAACTAGCAGC
TAATACGTTTCAGTCGTCTTCGCTGACCTGACAAATACTCATAATGAATG
TGCTACTATTTTTTGCCTGTTACACCTGCAACGACTGAGTATGCGGTCTC
CTGGCCGAAAATGACTATGAAGATTTATTTGCGTGATTGCCCTGACCTTG
AAATGACGAAAGGAAACTGGAACTTCTGTCTTCCCATTTCAT
FMO13455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ird5-RB | 2488 | CG4201-RB | 60..1178 | 9..1119 | 4970 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16047952..16048812 | 1005..150 | 4015 | 98.8 | Minus |
| 3R | 32079331 | 3R | 16049221..16049362 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:12 has no hits.
FMO13455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:17 Download gff for
FMO13455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 59..1152 | 6..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:03 Download gff for
FMO13455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 58..1151 | 6..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:38 Download gff for
FMO13455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 58..1151 | 6..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:38 Download gff for
FMO13455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16047862..16048811 | 151..1094 | 97 | <- | Minus |
| 3R | 16049221..16049364 | 6..150 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:03 Download gff for
FMO13455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11873584..11874533 | 151..1094 | 97 | <- | Minus |
| arm_3R | 11874943..11875086 | 6..150 | 99 | | Minus |
