FMO13456.5prime Sequence
1116 bp (1024 high quality bases) assembled on 2013-02-11
> FMO13456.5prime
CAGTCGACATGGAGGCCACCACTACCACAACACCTGACTTGAATCGCGGC
GATGCCACCAGGAAGAGTGTCCGGCTGTATGCCGCCCGCAAGGGGGCGGC
ACCTGCGCCGCCCAAGCTCAGTGTGGCGCCATCTAGTAACCAGAACAGCA
ACCACAGCAGCAACAACAACAATAGCAGCAGTAACTTGCCGGAAACGGAA
AAGGAAATGGAACTGCGTCAAACACATCTTGCCAACAAGGATCTCGATGG
AGCCACCGAAGACGACAGCATAGTGGAGCTTCGACGACGTGATGCCCAAG
CCACTCCATTGCCCAGGATAGCCGTATCGGCTCTACCCACCCTACAGCCG
CATCCCACGCCCAAAGAACGCCAAAAGCCGCCAATGCCACGCCTTCTGTC
CACCGAAGACGATGCCGGTGTGTCCTTTGCCCTCGGCTCCATCGAGAAGC
ACATCCATAACGTGGAGGAGAGCTTTAAGCAACAGCAGCAAAACCAACAA
TCCCAATCATCGATGGACGTGATGAAACTGGAGATCAAGCGCAAGCAGAG
CAAGCGCTACGGTGAAACGGAAAACCTTCTGCGACCGGGCATTAGTGACA
TGTCCTCCGAGAATGATTTTCAGTATTTGGGCGGCAGGCGGGCAGGAGAA
CTGGATGACAGCAATGAGCTGATGTTATCGGAATTCCAGCGCGGCAGCGA
TGGTCGTAACTCGATCGGAGCCTATTCCAAGAACTCGGCTGCTGCCGCAA
ACGGAGCAAATGCTGTGAAGGCTAAACTGGCACGTACTGCCTCCGATACG
AAGAATAATGATACGGTGCTGGCCATGAGGGCCACTTTTAAGCAGAAGCA
GCACTTGCAGGACGAGAAACAGCCAGCGGTATGGCGACCAGCTGGCACTG
GACCCACTCCGGCGGCCAGGAGCTCCTCCTCACACGTCCACTCCGGCTCG
GCCAGTCGTGCGTAGCAGCAGCAGCGTGATGGATGGAGTGCCTCCATCTA
AGCTTACGCCACTACAATTTCAGCGTCTAGCGGGCTGGAGGAGATTTGCG
ACATTGGAAGCTTTGTGACCCAAATCCCTCAATCGTCTGGACACTCTGAT
CTTCGGACAGGAATAT
FMO13456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-1-RT | 4990 | CG8201-RT | 402..1476 | 9..1074 | 5000 | 98.3 | Plus |
| par-1-RR | 3918 | CG8201-RR | 358..1432 | 9..1074 | 5000 | 98.3 | Plus |
| par-1-RP | 4849 | CG8201-RP | 358..1432 | 9..1074 | 5000 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19468971..19470036 | 9..1066 | 4835 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1569 | 132..185 | 180 | 81.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6848 | 144..228 | 161 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6794 | 132..213 | 159 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6842 | 138..185 | 159 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2427 | 126..185 | 153 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2455 | 139..270 | 150 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6828 | 144..226 | 150 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2421 | 144..185 | 147 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6827 | 144..185 | 147 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6931 | 135..251 | 147 | 63.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1163 | 123..179 | 147 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1586 | 135..181 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2403 | 144..228 | 143 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..2673 | 138..179 | 140 | 83.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6773 | 133..185 | 139 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2832 | 135..179 | 135 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2443 | 135..186 | 133 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1107..1200 | 135..226 | 132 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..6914 | 133..185 | 130 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2490 | 135..185 | 129 | 72.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1145 | 135..185 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2823 | 147..185 | 123 | 79.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3322 | 128..180 | 123 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..6926 | 144..231 | 122 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6966 | 155..402 | 121 | 57.4 | Plus |
| BS | 5142 | BS BS 5142bp | 2028..2080 | 135..187 | 121 | 69.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8004 | 146..199 | 117 | 72.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9448 | 146..199 | 117 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5643..5683 | 140..180 | 115 | 75.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..569 | 147..187 | 115 | 75.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 144..245 | 113 | 60.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3336 | 140..185 | 113 | 71.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6594..6628 | 149..183 | 112 | 80 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8050..8084 | 149..183 | 112 | 80 | Plus |
FMO13456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:19 Download gff for
FMO13456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RP | 303..1361 | 2..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:05 Download gff for
FMO13456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RP | 351..1409 | 2..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:40 Download gff for
FMO13456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RP | 351..1409 | 2..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:40 Download gff for
FMO13456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19468964..19469997 | 2..1029 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:05 Download gff for
FMO13456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15356469..15357502 | 2..1029 | 98 | == | Plus |
