FMO13457.5prime Sequence
986 bp (986 high quality bases) assembled on 2013-02-11
> FMO13457.5prime
CAGTCGACATGCTCAGACAACTGACACGGTCAATGGGCCCGACCTCGCGG
CTGCTTAAGCAGGTCAACTATGGCACAAATGCCCCAGCTGGCACCCACAT
TCCCGTGACCAAGGCCCTGGAAATTGGACAGTGGGAGGAAAAGCTCAAGG
CCGCCGGCGTCGAGGACAGGAAGTTCAACGTGAAATGCATCGTGTCGCAT
GTCCTGAAGCAGAAGTTTAGTTCGGTTCCTGACTCATTTGACCAGCTGCA
GCTAAATCCCGGCCAGCTGGCGGATTTCGAGCGCTTCCTGGAGGCCCGTT
GTGCCCGCATGCCGTTGCAGCACATCATTGGCGAGTGGGACTTCATGGAC
ATTACGCTGAAGACATCGCCGTCGGTCTTCATTCCACGCCCCGAAACGGA
GGAGTTTATGCGCCTGGTGATCGATGATCACAAGAACGCAAAGCACGTCG
ATCTTTTGGAGGTGGGCTGCGGCTCGGGCGCCATGTCCTTGTCCATGCTA
CACAGTCTGCCGCAGGTGGTGGCCACTGCCATTGAGCGTAGCAAGGCGGC
AACCGTGCTGGCTGCGGAGAATGCCAAAATGCTGGGGCTGCTGAATCGAT
TTGAGGTACACAACCACACCATGGAGGAGGACAAGTACCTGCCGGAGGCG
CTGAAGGACAAGAAGTACGATTTGATCATCTCCAATCCTCCGTATGTGAA
AACTGAGGAGTTTCAGTTTCTGCATCCCGAAGTCGTGGTGTATGAGAACC
TTAATGCCCTGGACGGTGGGTCCGATGGATTGAGGGTGGCTCGACTGGTC
TTCGACTTGGCATGCCGGCACCTGCGTCCCGGTGGCAAGCTCTGGCTGGA
ACTGGGCACGACCACCCGCCGATGGTGAGACCATTATGATCTGAGTACGA
GGGCCGGCTTAGTTCATCGCCGTTACAGTGACCAGTATCAGCGCGAGAGA
TTCGTTCAGATCGAGAGTCGCAAGCTTTCTAGACAT
FMO13457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9531-RB | 1221 | CG9531-RB | 91..1054 | 9..966 | 4580 | 98.8 | Plus |
| CG9531-RA | 1369 | CG9531-RA | 91..1054 | 9..966 | 4580 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6466816..6467339 | 742..219 | 2605 | 99.8 | Minus |
| 2L | 23513712 | 2L | 6467399..6467608 | 218..9 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 6466532..6466764 | 966..740 | 790 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:21 has no hits.
FMO13457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:20 Download gff for
FMO13457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 93..1056 | 9..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:08 Download gff for
FMO13457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 91..1054 | 9..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:42 Download gff for
FMO13457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 91..1054 | 9..966 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:42 Download gff for
FMO13457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6466532..6466764 | 740..966 | 95 | <- | Minus |
| 2L | 6466819..6467339 | 219..739 | 99 | <- | Minus |
| 2L | 6467399..6467608 | 9..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:08 Download gff for
FMO13457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6467399..6467608 | 9..218 | 100 | | Minus |
| arm_2L | 6466532..6466764 | 740..966 | 95 | <- | Minus |
| arm_2L | 6466819..6467339 | 219..739 | 99 | <- | Minus |
