FMO13459.5prime Sequence
1127 bp (1011 high quality bases) assembled on 2013-02-11
> FMO13459.5prime
CAGTCGACATGGATGCTAACAAAGCGGCAGAAACGGCAGCCAAAGAAAAT
GCCGCCGATAAGGTAAGCGATGTGGAAAATGCATCGGTTACTGCGGGGGT
GGCGAAAGCCGTGGGGGCACAGCCGGAAAGGGGCTCCAAAGATGCAGCCG
AATCCCCCGCCGCTGTCGACGCCTCTGCCTCTGCCGCCACTGATGACGTC
GCTGATAAAAAAGCCAAAGGAGACTCAACGGCTGTTTCAAATACCGAATC
GGATGCAGCTGCAGCGGACAAAAAGGAGAAATCCCCCTCGCCGGTAATAA
AGAAGTCCAACAATAAGGATGCTAAAAAGGAGGACAACTCCGAAAAGGAC
GAGGAGAACTCGGAAGACGGCGATGAGCCAGAAGATGAGGCTGATGAGAA
AGCTAGCGATGAAGAGAGCGAGAAGAAGAAACCGAAATTAGATGCAGAGG
ACAAGATAAAGGATGCCACTGATGAGTCCAAGCCAAAATCGGGAGCCGAT
AAGCCCAAGAAACCTGAGCCCAAGGCCAAGAATGGCAAGGTGGCTAAGGA
GGAGGACGACGACGAAGAGGACGAGGATGATGAGGATGCCGAAGATGACG
ATGGAGACGAGAACGATGGCCTGGACAAGAACAACGAGGTGGCCGAGGAT
GATGAGAATGTCGTCGCTCTCGCCGAGATTGATCGCATTAATGAGAATAT
CAACAAGACTCGTGTAGATGGTCTGCAAACATTGCATGCAATCTGCTTTG
GCGCCCAAAGCAAGAACAATGTGGTCAAGAAGAACTTGCGATCCTTTGCC
GGTTTCGAGTTTGCCAAGGATTCAGCGGAGTACAACAAAAAGCTGGAGGC
CATCAAAAAGGTGGATAATAAGGCCTGCGCAGCATCTGCGAGATCCTTAC
CCTCGATCGCAAGGGCAGCAAGAACGAGACTGTCCTTCGAGTGCTCAAAT
TCCTAATGACCGGACGAGTCGCTTTGCTTGAGCAGGTGATGAGGAGAGAG
AGATGCCGAGGACGAGATTCTGATGAGATGAGAGACCGCCCAGTGAGAAG
ACAGAGCGCCAGAAGCGGAAGTCTACGCGGGCCTGGCATAGGTCTGCACG
CCAATTCACGGACGTCAGGCCGCGCAC
FMO13459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dek-RE | 3947 | CG5935-RE | 82..1210 | 9..1116 | 4930 | 97.1 | Plus |
| Dek-RD | 1920 | CG5935-RD | 82..1210 | 9..1116 | 4930 | 97.1 | Plus |
| Dek-RA | 2567 | CG5935-RA | 82..1210 | 9..1116 | 4930 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16857631..16858114 | 257..740 | 2420 | 100 | Plus |
| 2R | 25286936 | 2R | 16856805..16857052 | 11..258 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 16858181..16858423 | 741..980 | 1085 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:51 has no hits.
FMO13459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:07 Download gff for
FMO13459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RA | 75..1117 | 2..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:48 Download gff for
FMO13459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RA | 76..1118 | 2..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:26 Download gff for
FMO13459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RA | 76..1118 | 2..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:26 Download gff for
FMO13459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16856797..16857052 | 1..258 | 98 | -> | Plus |
| 2R | 16857633..16858114 | 259..740 | 100 | -> | Plus |
| 2R | 16858181..16858485 | 741..1035 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:48 Download gff for
FMO13459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12745686..12745990 | 741..1035 | 95 | | Plus |
| arm_2R | 12744302..12744557 | 1..258 | 98 | -> | Plus |
| arm_2R | 12745138..12745619 | 259..740 | 100 | -> | Plus |
