FMO13460.5prime Sequence
833 bp (833 high quality bases) assembled on 2013-02-11
> FMO13460.5prime
CAGTCGACATGACCCAAAGGATTGAAAATGTAGTGAAAGGACTAGTGATG
GTGGTTCTGGCTTTTATGGTGGCACAAACGGTGTCCGATTGCAATGTCTG
TCAATCAAATCAAGTGGCCTGCATCAACTCCACGTCCTTTTACTTGTGTT
TTGGAGATGGAACTCCACATCGTGATCAGCTATACCATTGCTTAGAAGGA
TTTGACTGCACCAATCTCACGGCGATTTGTGTTCAGAAGAGCAGCCAGCG
GCCTCCCAGTTGCGGGGATACCTCTCAATGTGGCCAATGTAGTGCCAATC
GGAATTATCTATTCGCGTGCCAGAGTCGTGGTATCTTTCAGATGTGCTAT
GGAGCCACTAGACCCACTGGGCAATTTGGTTACTGCCCCACGGGTACGGT
TTGTGATGCCAGCAGCACTGCGATTTGTGTGCCTGAGGTCGCGGGTCAAA
CGCTGACCTGTGACATAAATGACGAACTGGTGGACACCACCACTGCAGCG
TCCGTGACCACCGAAACTACTGGCGGTACCACTGAAAGTAGCACTGAGAG
CACAACTGAAAGCAGCACCGATTCAACTGTAACCACCGAGACGCCCACTA
CAGTGACGCCTCTAACTCCTGCCCAGATGTGTGCCCAAAGGAATGCCACT
GGTCTTTTTCCCGTCATTCCTGCGGATCCCTATTGCCAGCGCTACATTAG
TTGTTACTTTCAAAAGAACGTTCTTATCAAATCTGCCGAATATAACTGTC
CCACAGATTCCTGGTTTGTTGCTCAAACTCAGAGTTGCGTCTACGTAAAT
CCCGGCTACTGTCTTGCAAGCTTTCTAGACCAT
FMO13460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34427-RB | 865 | CG34427-RB | 16..822 | 9..815 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8805043..8805579 | 155..691 | 2685 | 100 | Plus |
| 3L | 28110227 | 3L | 8805645..8805769 | 691..815 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 8804878..8804984 | 50..156 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 8804779..8804822 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:46:54 has no hits.
FMO13460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:08 Download gff for
FMO13460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34427-RB | 7..825 | 2..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:49 Download gff for
FMO13460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34427-RB | 7..829 | 2..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:28 Download gff for
FMO13460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34427-RB | 7..829 | 2..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:28 Download gff for
FMO13460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8804770..8804820 | 2..50 | 92 | -> | Plus |
| 3L | 8804879..8804984 | 51..156 | 100 | -> | Plus |
| 3L | 8805045..8805579 | 157..691 | 100 | -> | Plus |
| 3L | 8805646..8805776 | 692..823 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:49 Download gff for
FMO13460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8797870..8797920 | 2..50 | 92 | -> | Plus |
| arm_3L | 8797979..8798084 | 51..156 | 100 | -> | Plus |
| arm_3L | 8798145..8798679 | 157..691 | 100 | -> | Plus |
| arm_3L | 8798746..8798876 | 692..823 | 96 | | Plus |
