FMO13461.5prime Sequence
983 bp (982 high quality bases) assembled on 2013-02-11
> FMO13461.5prime
CAGTCGACATGGATGAATGCGACAACCCCGTCGTCGTCTCACTAGGAAAA
CTCGAATCACAGCAGCTAAACGAGGGGGTCGCCGAGCCGAGTGCGGAAAA
TTCGGATCAGGAGCAGGCACTTTGTGACTACAAAGAGCCGAACATTGATG
ATAAGGAAGCGCTTATAGAGCAGGACCTTCACAAATCATCAGTCGAGGAG
GACGCAGCTAACGACGCGGAAGTCGAGGCAGTCATCATGGGACAGGCGGA
GAGCAAGAAGCAGGGCAGCAAGTCGAGTCGCCGCCACCACAATGGCAACG
GAAATAGTAATGGCAATCCCACGGAGGCGATGGAACAGAATCAGACGGTG
CACACCAAAGGCACCGCCATGTCCTTTGGTTTCCGCAAAAAGCTCAATGG
GACGCCCAAGAAGTTCAAGAAACTCCTGGAAGGCGGCGACAAAAGCGCAA
CTCGCACAGACACAAAGGATGACAACGGAAATGCAGCTGTTCCCATTCAC
TTCGAGAAAGTAGGCGCCGCCGCTGTACAGAAGGCTGGGACTTTGGCGAC
AGGTGCGGCCGGCGGACGTTTCGGTTATCGTGGGGCGGTGCCACGCCCCT
CTTCTGCAGGCTTCACTGCGCCCAGTGAAGATTCCGAATCGGAATCGATG
GCCAATGCCCAAAACAACATCAACAACAACAATAACAATAATAATGGACG
TGGAACGGAGAATGGTCCGGTGTTGGTGAGCAATTTGAAACGACGCTCCA
AGAGCGCACACGCCGGACGATCCGGCGATGGGGAGCCCAAAATAGCCCAG
CCCAAGACGCTGACGTTCAACCTGAATCAGAACACCACCATCGAGTACCA
GCGGCGTCAGTTCTTCGGCGAGATCGCGGACGAACGTCGGGTTCCGGATC
CGGATCGGGAACGGGATCGAGAGCTATGCAACCGAGATATAACTACACAG
CCTGGCCAGCAATGCATGCCAATGTCATAGTTC
FMO13461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42268-RM | 5329 | CG42268-RM | 455..1430 | 9..983 | 4795 | 99.6 | Plus |
| CG42268-RL | 5385 | CG42268-RL | 455..1430 | 9..983 | 4795 | 99.6 | Plus |
| CG42268-RH | 5383 | CG42268-RH | 455..1430 | 9..983 | 4795 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9749518..9749769 | 735..484 | 1260 | 100 | Minus |
| 3L | 28110227 | 3L | 9750053..9750300 | 486..239 | 1240 | 100 | Minus |
| 3L | 28110227 | 3L | 9750891..9751122 | 240..9 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 9749195..9749438 | 978..736 | 1060 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:34 has no hits.
FMO13461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:24 Download gff for
FMO13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RF | 447..1430 | 1..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:16 Download gff for
FMO13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 447..1430 | 1..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:47 Download gff for
FMO13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 447..1430 | 1..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:47 Download gff for
FMO13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9750053..9750299 | 240..486 | 100 | <- | Minus |
| 3L | 9750892..9751128 | 1..239 | 98 | | Minus |
| 3L | 9749191..9749438 | 736..983 | 97 | <- | Minus |
| 3L | 9749518..9749766 | 487..735 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:16 Download gff for
FMO13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9742291..9742538 | 736..983 | 97 | <- | Minus |
| arm_3L | 9742618..9742866 | 487..735 | 100 | <- | Minus |
| arm_3L | 9743153..9743399 | 240..486 | 100 | <- | Minus |
| arm_3L | 9743992..9744228 | 1..239 | 98 | | Minus |
