FMO13462.5prime Sequence
960 bp (954 high quality bases) assembled on 2013-02-11
> FMO13462.5prime
CAGTCGACATGACGGAGCACCAGGCCGAGGAGCAGGCGGACACGCCGCCC
ACCAAGGTCAAGGCCACGCCCACACCCACCCCGAGTGGAAAGTTCAAGGA
CGCGAAGGAAGACGCCTTCCTGTCCACATCGCCGGACAGCGCCAACGGCG
ATGCCCAACACAAGCTGCCAGCGGACCAGCTGGCCATGTCCTCCAGTGCG
CATCCCCAGCAGGCGGGCCAAGCCCGCCCGCTCATCCTGCAAGCCTTCCA
CCGCTGCTCCTCGCCAGAACAGTGCGTCACGCTGCACGACATCCTGGACT
CCTTTAAGGCGCCGCTCTCCGAGGACCAGGCCTGGGCCCTGATCCACCAG
TTCGCCGGGCTCTACCACCAGGTGGCCGTACAAGCGCACACCTGTGCCGC
GGACTACGAGGCCGCCCTGCCCACCGGATTCGAGCTGCACTTCCATCGCG
ACGGCAGCGTCCACTTCTCCGGCCCGGATCAGCTGACGCCTAAGGAGCAA
CTGCAGCAGGAGCAGATCCCCCTCCCCCCGCAGCACGACGTGATTGTGGA
TCAGCCGGACCACAGCGCCAGCAGCAGCGGCGACAGCAGCGTCATCAACA
GAGCGTTCGACAACAGCAATCACCACCACCACCATCAACATCATCACCCG
CCGCTCGTCGTCTCGCATAGAAAGATTATCAGCGAACTGGCGGAAATCGT
CTACACCGCCTTGGATTACAATCTGCCGGAGGACGAGGAGTGCCAAGTGT
CACACGAGCTGGAGAATCTGTTCAACTTTATGACGGCAGATGAGACAGAC
GACGATTGCATTGACGAGGGCATCGACGAGGGCGACAAGCGCTGGGACGA
CGAATCCGAGGAGGAGCGCAACGATACCAAAGACTAGAGCACATATCGAG
ACCTGCAGAATCACATAAAACCACCCTGCCTGAAAACCACTATAGAGCTT
GTCTGCAAAG
FMO13462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RH | 2182 | CG10076-RH | 602..1553 | 9..957 | 4610 | 99.3 | Plus |
| spir-RG | 2669 | CG10076-RG | 602..1553 | 9..957 | 4610 | 99.3 | Plus |
| spir-RF | 4875 | CG10076-RF | 602..1553 | 9..957 | 4610 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20311820..20312414 | 9..603 | 2975 | 100 | Plus |
| 2L | 23513712 | 2L | 20334079..20334198 | 673..792 | 585 | 99.2 | Plus |
| 2L | 23513712 | 2L | 20334620..20334724 | 792..895 | 475 | 99 | Plus |
| 2L | 23513712 | 2L | 20322008..20322080 | 602..674 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2847 | 570..654 | 134 | 63.5 | Plus |
FMO13462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:26 Download gff for
FMO13462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RB | 598..1556 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:19 Download gff for
FMO13462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RF | 598..1556 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:49 Download gff for
FMO13462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RF | 598..1556 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:49 Download gff for
FMO13462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20311816..20312414 | 1..603 | 99 | -> | Plus |
| 2L | 20322010..20322080 | 604..674 | 100 | -> | Plus |
| 2L | 20334081..20334198 | 675..792 | 99 | -> | Plus |
| 2L | 20334621..20334730 | 793..900 | 98 | -> | Plus |
| 2L | 20336287..20336347 | 901..960 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:19 Download gff for
FMO13462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20311816..20312414 | 1..603 | 99 | -> | Plus |
| arm_2L | 20322010..20322080 | 604..674 | 100 | -> | Plus |
| arm_2L | 20334081..20334198 | 675..792 | 99 | -> | Plus |
| arm_2L | 20334621..20334730 | 793..900 | 98 | -> | Plus |
| arm_2L | 20336287..20336347 | 901..960 | 91 | | Plus |
