FMO13464.5prime Sequence
1132 bp (1051 high quality bases) assembled on 2013-02-11
> FMO13464.5prime
CAGTCGACATGGATATGGATTTGGAGCAGCTAAAGAACGACTTCCTGCCG
CTTATCGCCGGGATCAAGCAGGAGCAGCTGGATGCCGTGCCCACGGATGC
CCTGCCCCAGATGAGCACACCAAACACGGCCAGCGGTGCGCCCACAACCT
CGTCATTGAGCTCCTCTTCGCTGAGTCTGAGCAACCCCTGCGACAGTGCC
GAGAAAAGGTCGGAGTCAAACTCTTCGGCATCAGCCAAGTTTACCCTTTT
CAAGTGCGTTTACTGCGCTCAACTCCTCGGATCCAACGATCGCCCCAAGC
TGTTAGAATGCCTTCACGTGGCCTGTGCCCAGTGCGTGAGCACCAAGTTC
TCAGAGCTGGACCGTTCCCTGCCACCATTGATCCATTGTCCGGTATGCGA
CAATGCGTCGCAGCAGGAGTTCATCGTGGACAACCAGTTCCTCATTGAGC
AGTGCACCGCCGGAGACAGTGGCGATGGGGTCGGACTTCTGGGTCTGACT
GGCGAAGGTCAGAAGAGTTCCGCTGCGGCGAGCATCCAGTGCAGCAGCTG
CTCCGATGGTGCGGTGGCCACGTCGTGGTGCGTTGACTGCTCGGAGTATA
TTTGCGACAGTTGTGTGCAAGCTCACCAGCGCCTGAAGATCACCAAGGAT
CACACGATCAAGCCCAAAGATGAGGCCAACAACGAGCAGCTGGCCGGAGC
TGCCGGGGTGGACAAGTTGCACATGTGCCAGTTGCATCCGCAGGAGAAGC
TTTCGCTATTTTGCGAGACCTGCGACAAGCTCACTTGTCGGGATTGCCAG
TTGAGCGACCATCGGGATCACAAATACAAGTTTGCGCACGAGATTGCCAC
GGAATCGCGACAGGCGCTGTCCACACTCGTTTCCGAAATCAACTACAAAC
GCTTCCTTCTCTCCTCGGCAACCAAAGGTTATTGATGACCGCCAACAGCT
GATCACGACAGAGAAAGACCTCATCAGGAGATCACCAGCCATGGCGGTGA
GATCACATTACGTCAATACCCGAAGGCAAGCAGCTAATCATGAAAATGAC
GAGGTGTGGGCACAGTAAATCTAAGGTGCCGGTGGGTAAAGAAGGGAAAG
GCTGACATGCTCTCCGCACAACCGAACACTTG
FMO13464.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bon-RF | 5778 | CG5206-RF | 704..1821 | 7..1122 | 5030 | 97.5 | Plus |
| bon-RE | 5787 | CG5206-RE | 704..1821 | 7..1122 | 5030 | 97.5 | Plus |
| bon-RD | 5769 | CG5206-RD | 704..1821 | 7..1122 | 5030 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20606280..20607160 | 209..1085 | 3730 | 97.4 | Plus |
| 3R | 32079331 | 3R | 20593842..20594044 | 7..209 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:47:40 has no hits.
FMO13464.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:27 Download gff for
FMO13464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RA | 679..1750 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:22 Download gff for
FMO13464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RD | 699..1770 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:51 Download gff for
FMO13464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bon-RD | 699..1770 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:51 Download gff for
FMO13464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20593837..20594044 | 1..209 | 98 | -> | Plus |
| 3R | 20606281..20607144 | 210..1069 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:22 Download gff for
FMO13464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16419559..16419766 | 1..209 | 98 | -> | Plus |
| arm_3R | 16432003..16432866 | 210..1069 | 98 | | Plus |
