FMO13465.5prime Sequence
1000 bp (1000 high quality bases) assembled on 2013-02-11
> FMO13465.5prime
CAGTCGACATGGCCAAAACCCGCATCAAGATGACGCCGCTGCGCAAGTCC
TCGTCCTCCAAGGGCATTGTGCTACCCATTAATGCCGCTGGAGGGTCGGT
CATTGCAGGCGCCTTAGCAGGAGGAGGAGGTGCAGGAACTGGGAGCGGTG
CTGTCAAGTCGGCGGTGGCCAGCAGCACCACCATTGAACTTGTTGAGAGC
CCCAATAGACATCAGGCCAAGAAGCCCAACACCGGCATTATGCCCATGCC
ACAGCGTTCCCACTCCATTAGCTCCTCGGCCTCCAGCGATGTGCTGTCCA
TAAACTCCGACTACGAAGCCTCGTTACCACTATCAGCCTTAGAGGATTCC
CAGAATGGACTGAACCGCTTGGAGAACGGTCAAGCCAAGAAGAGGAAACT
GTACGTGATCACCGAAAAATCGGATGAGACGAAAGGTCAGACTCTGGAGA
CAAATGGACAGCCCAAGAAGCGTAAGATGTTCGTGGTTGTGGAGCAGGAT
AAAGATGTGGCGGGCAAGAAACTAATGATTATGGCCGACAAGCCGCAGAC
CAATCTTACCCAGCATTTGGAGAAACTACTGCCCGAGCTATTGAATCGCA
TACAGGACAAAGAACAGAAGCAGATCAAACCAGCTCCAGTGGTGACTAAA
GCCAAGCCGGTGGTTAACAATCCCAGACCACATATAACATTGCCGCCCAA
AAAGAATCCAACTAATTTTGCAAAGATCACGTCCACACCAAGCTCAGTGC
CTTCATCCATTCAGATGCCACTGCCAATTCAGAATACCAAGATCCTAAAG
TCCGAGAATTCGGAACTGACAATGAATTCGGATGAGATCGAGACGAACAT
AAATCTATCGCCCGACTTCCGCTTCCTAATGAAAATCCTACCCAAATTGG
AACAGCTGCCCGAGCCCCACAGCAGAACGTGAAGCGTTCCATCCAGATCT
TCGTGGAGAGAGCTACAGTATTTACGCACAGATGCAAGCTTTCTAGACAT
FMO13465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bip1-RB | 1472 | CG7574-RB | 177..1146 | 9..976 | 4800 | 99.8 | Plus |
| bip1-RA | 1825 | CG7574-RA | 530..1499 | 9..976 | 4800 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8054659..8055441 | 976..196 | 3815 | 99.7 | Minus |
| 3L | 28110227 | 3L | 8055876..8056064 | 197..9 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:43 has no hits.
FMO13465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:28 Download gff for
FMO13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bip1-RA | 522..1497 | 1..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:25 Download gff for
FMO13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bip1-RA | 524..1499 | 1..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:53 Download gff for
FMO13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bip1-RA | 524..1499 | 1..976 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:53 Download gff for
FMO13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8054659..8055439 | 198..976 | 99 | <- | Minus |
| 3L | 8055876..8056070 | 1..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:25 Download gff for
FMO13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8047759..8048539 | 198..976 | 99 | <- | Minus |
| arm_3L | 8048976..8049170 | 1..197 | 98 | | Minus |
