FMO13467.5prime Sequence
877 bp (877 high quality bases) assembled on 2013-02-11
> FMO13467.5prime
CAGTCGACATGGCTACGCTACGGAACCACCTATCGGCGGGCGGGGGGTTG
AACCACAGCGGCCCGGACTCGCCACAGGAGCCGCAGGACGCGGGCGCCAC
GCTGGCCATCGGCTATGTGCGGGAGTTCAGGATGCGCGTGGCCTGCTTCC
AGGTGCAGCGCTCCGAGGAATCGCTGGTGTACGTGCAGCGCAGCGTTGCG
CTGCTAGGCACCAAGGTGCTGCCGGCGCACTTTGCCCCCACGCCAGGCAA
CCTGGAGCTGGCCCGCTTCTATGTGGATCTCTACGCGCTGATGGGCGCGC
TGAAGAACGAGGGTGCCGAGGGCGATGTGCTGTGGGCCTGCGTTGGACTG
GTGCAGCACTGCTCACGGAATCTGGAGGCCCGCCAGGCGGTCGTCGAGCA
TTTCTGCTTTGTGCCGCTGCTGGGAGTGCTCATAAGGCATACCAAACGAA
CGGAACGGGTGCACCGGCTGCTGGTGCTGCTGCAGGACCTTACATACGGC
ATAAAAATCGCCTGGGAGGAGCCCTTCCTGGCTGCGCTGATCGAGCATCT
GGTGGGGATCGTACTGTGTACGGAAGACGTCTCCTGCACTGCGAGTGGTG
GGTCCGTTCGCGACGACGACGACGAAAATACAATGCTCGCCCTCTCCGTG
CTGGTGAACCTTTGCTACAAGAACTTCGCCGTGCTGTTCCTCTTTCTGCG
CAGCGTAACATATCCGCCTTTTGCCGGCGCATCCAGAACTACGGCCTGCT
GGCGTACAAAATGCTAATCATCCTCTTCGGAGGACGTCTACTCCTTCCAG
CAGTCCGAGCTGTGCACCTTCCTGCGCCTGTCGTTCGCCGGCATCTAGGA
CTGCCTGAAGCAATGGAACGTCGCCCA
FMO13467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12702-RB | 3353 | CG12702-RB | 543..1411 | 9..877 | 4270 | 99.5 | Plus |
| CG12702-RC | 3461 | CG12702-RC | 651..1519 | 9..877 | 4270 | 99.5 | Plus |
| CG12702-RA | 2896 | CG12702-RA | 86..954 | 9..877 | 4270 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19761365..19762233 | 877..9 | 4220 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:48 has no hits.
FMO13467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:30 Download gff for
FMO13467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12702-RA | 83..958 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:29 Download gff for
FMO13467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12702-RA | 78..953 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:57 Download gff for
FMO13467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12702-RA | 78..953 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:57 Download gff for
FMO13467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19761366..19762237 | 1..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:29 Download gff for
FMO13467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19655399..19656270 | 1..876 | 99 | | Minus |
