FMO13470.5prime Sequence
1125 bp (1026 high quality bases) assembled on 2013-02-11
> FMO13470.5prime
CAGTCGACATGGGAACACGATTGTATTACCGCCGATCCGGCGGTCAGTTA
ACAGATCCGATAATTGAGAAGCTAGCCGCTCGTTTTGAGCGTTCACTGGT
GATTACGGATGAGCCGCTAAACAACACATACATCGAGAGTCCGCCGGAGT
CTTCCGATCGCGAGGTTTCACCCAAACTCGTCGTGGGCACCAAGAAATAC
GGTCGCCGGTCTAGGCCACAGCAGGGAATCTACGAGTTATCCGTCACGGA
CTCGGACAATACGGACGAGGACCAGTTGCAGCAGCAGCAAAATCAGCGAA
GCCTCAACGGATGCGATGAGCTGGGAGTTCAGGTGCAACGTTCCTCGTCC
CAGAGCGATCTTCCTGGCAGCCGGCGTCTGCGGTCCGTCCACACCAGCGG
GAGCAAACTGAAGCGTTGTGCTTCACTGCCAGCACGCCGGAAGATGAACA
GCAACACCACGGGAGCCACTACATCACCGACGGCAGCGGCCAAGTTGAAA
CAGCTTTCCATCCAGAGCCAGGCGCAGCACAGCAGCAGCGTGGAATCACT
GGACACCGTGACGCCGCAGCAATTGGAGACGATCTCAGTGCATAGCATTA
TGGAAGCCTGGGAGCTGGCCAGCATTCCCAACACTCGCAACCTACTTCAC
GTCCTGAGATTCGATGAGGAGGAGGAGGTGAACCTGCAGCAGCTAACTAA
GGCATTGGAGGAGGAGCTGCGGGGCATCGATGGGGATCACGAGCAATCGA
ATATGTTGCGCGCTCTGGCTGCTCTGCACGCCACCGAGTTGGGCAACTAC
AGACTTGCCTATAGGCAGCAGCATGAGGAGAACCTCAAGCTGAGGGCCGA
TAATAAGCGGCCAACCAAAGGGTGGCTTTGCTTGCCGTGAAGTGGATGAG
CGGCATGCGTCGCTGGAGATACTCCAGAGCAGTGCAGCAGCTGGAGCAAA
GACACGCCAGCATGTGCGTGAATTAACGCTGCGATGACTATGACCGCGAT
CACTGACCAGCATGACGGGAAGGCTGAGCACAGCCTTAATCGCTTGGACC
AGGAAGAAATCGTCTGAAAACGGACTTGAACTGGTCGCACTTGAAACGAA
CTTGATTCGAACCAAGGCTCATTCC
FMO13470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RD | 2514 | CG14025-RD | 17..1114 | 9..1091 | 4920 | 97.5 | Plus |
| Bsg25D-RC | 4065 | CG14025-RC | 17..1114 | 9..1091 | 4920 | 97.5 | Plus |
| Bsg25D-RE | 4549 | CG14025-RE | 613..1634 | 85..1091 | 4540 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5275296..5275781 | 1026..552 | 1845 | 96.3 | Minus |
| 2L | 23513712 | 2L | 5276933..5277181 | 335..87 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 5276512..5276734 | 552..330 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 5277247..5277325 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:24 has no hits.
FMO13470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:21 Download gff for
FMO13470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RC | 6..1117 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:10 Download gff for
FMO13470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RC | 9..1120 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:43 Download gff for
FMO13470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RC | 9..1120 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:43 Download gff for
FMO13470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5275301..5275780 | 553..1021 | 97 | <- | Minus |
| 2L | 5276512..5276731 | 333..552 | 100 | <- | Minus |
| 2L | 5276936..5277180 | 88..332 | 100 | <- | Minus |
| 2L | 5277247..5277331 | 1..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:10 Download gff for
FMO13470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5275301..5275780 | 553..1021 | 97 | <- | Minus |
| arm_2L | 5276512..5276731 | 333..552 | 100 | <- | Minus |
| arm_2L | 5276936..5277180 | 88..332 | 100 | <- | Minus |
| arm_2L | 5277247..5277331 | 1..87 | 95 | | Minus |
