FMO13471.5prime Sequence
1169 bp (1062 high quality bases) assembled on 2013-02-11
> FMO13471.5prime
CAGTCGACATGGCGCCCTTCTACAAGCGCATCTGCCGCAGTCTTTCCAAG
CGCTACAAGGAGCCCTCGTTAAGTCTGGACAATACAGTCGAGACGCTGCT
AATCAAGAATGAGGGGGACTTCATCAGCGTGGAGCAGGGCAAGGAGCTGG
TGGCTCGCAAGCGCAACTCCCAGCAGCTGGCACATCCGCCGGCCCACTTG
CATCACCACACCCAGAACCACGCCCACAATCATCACACTCTCCAGCAGCA
GCAGCATCAGCAGCAGCAGCAACAACAACACAAGCGGGACGAGAATATGA
GGCAGCTCCTGGATGTGACCAACACGCTCACCATTGAGGAGCTGCGCGAT
TTTCAGATGCGATATGGCTCACCACATCACAGCCGCTCGCAATCGGTGAA
GATGCCCGGCAGCAGAGCATCCGGAAGGCCAAATCAGCTGTGTCTGCCCC
AGCAGAGATCCAGGGTGGCTTCCATGCCGAATACAGGAGTAGAGGAGGAG
TACTACAGACTGCGTCACTTCTCGATCACCGGCAAGGGTGTGGTAAATCG
CGGTGATTCCCTCAAGAGCCGACGCAGTCGCTCCAACAACAGCGTGGCCA
GTTCCAATTCCAGCACGGAGCACCTGACCACCCAGCAGCAGCTTTCCGCC
CCCGCATCCGTATCCGCTCGAACTTCGCTGGCTTCCAGCAGGGAGAGCAG
TACATCCAATCCGGGCAACGGTCCCTACAGGGTCCTGATGCTGGGAGGTC
CTGCGGTGGGCAAGAGTTCGCTCGTCTCGCAGTTCATGACGTCGGAGTAC
CTGCACGCCTACGACACGAGCATCGATGATGAGTCCGGCGAGAAGGCCGT
TTCAGTATTACTCAGTGGCGAAGAGTCCGAGCTGATTTTCATCGACCATG
GATACACCGAAATGACTCCGGATGAGTGCCTGACCAACTACGATCCGCAC
GGGTTACTGCGTCATCTATTCGGCCGCGGACAGGAGCAGCTTCAGTGGTG
GCGGGAGCAAGTGCTGCAGGTGCTTCTGGACCAATCAGAACATCGCCCAG
AAGGCAGTCATTCTTAGTATCGACAAGCGAACTTGCCAGGAGTCGACTGT
GTTCACCCTTCTGGAGAAGGGCAAGCATGCTACCGGCCTACGATGGAAAT
TCATCGAACGCTCCGTGGG
FMO13471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk1-RA | 1946 | CG44011-RA | 246..1390 | 9..1157 | 5270 | 97.9 | Plus |
| Rgk1-RB | 5443 | CG44011-RB | 3795..4887 | 61..1157 | 5010 | 97.8 | Plus |
| Rgk1-RC | 3239 | CG44011-RC | 246..1064 | 9..827 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19319383..19319688 | 366..61 | 1515 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19318072..19318341 | 731..462 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 19314611..19314753 | 1064..918 | 520 | 96.6 | Minus |
| 2R | 25286936 | 2R | 19318398..19318501 | 464..361 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 19317538..19317639 | 829..728 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19315247..19315339 | 917..825 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 19325198..19325251 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:27 has no hits.
FMO13471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:22 Download gff for
FMO13471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RB | 234..1341 | 3..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:12 Download gff for
FMO13471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RA | 241..1348 | 3..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:44 Download gff for
FMO13471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RA | 241..1348 | 3..1117 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:44 Download gff for
FMO13471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19317542..19317636 | 731..825 | 100 | <- | Minus |
| 2R | 19318073..19318339 | 464..730 | 100 | <- | Minus |
| 2R | 19318399..19318500 | 362..463 | 100 | <- | Minus |
| 2R | 19319388..19319686 | 63..361 | 100 | <- | Minus |
| 2R | 19325198..19325256 | 3..62 | 95 | | Minus |
| 2R | 19314561..19314753 | 918..1116 | 92 | <- | Minus |
| 2R | 19315247..19315338 | 826..917 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:12 Download gff for
FMO13471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15205047..15205141 | 731..825 | 100 | <- | Minus |
| arm_2R | 15205578..15205844 | 464..730 | 100 | <- | Minus |
| arm_2R | 15205904..15206005 | 362..463 | 100 | <- | Minus |
| arm_2R | 15206893..15207191 | 63..361 | 100 | <- | Minus |
| arm_2R | 15212703..15212761 | 3..62 | 95 | | Minus |
| arm_2R | 15202066..15202258 | 918..1116 | 92 | <- | Minus |
| arm_2R | 15202752..15202843 | 826..917 | 100 | <- | Minus |
