FMO13472.5prime Sequence
1123 bp (1038 high quality bases) assembled on 2013-02-11
> FMO13472.5prime
CAGTCGACATGAAATGCTGGCACAATGTGGTGAGGCGCAGAAGGAAGAAG
CCGACGGCAGCGGCGGCGGCGAAAGGATCAAAGGGGTCGCATGGAGGCGT
GGCAAGTCCTCGAGATGAAGATGCCATCTGCCAGCGGCAGCAACAAGTGG
ATACCTACACTTGGCTAACAACACAAGCTGTCCCTCTGCTGTGGCTGCAC
TTGTTGCTCCTTGTCGCATTTGCAAAACATGCGGCTGCAGCCACAACAAT
TGCCACAAATCCCGAGGCCACCACAACAACGGTGAGCAACTACACGGTGA
CGACCACGGCACTATCATCATCCACGACAACCACTTCATCGGGATCAGCT
CCAGCTTTATCATCTGCGGCGGATAAGTTCGCCGGCAACTGGGCCAACTT
GGAGGATTCGTTCCGGAATATCGTGCGGATTGGTGATGGGAACACGGTGA
CACGGACGTCCATTGAACAATCGCTGGTGACGATACACGACATTGCCACC
GAGAACTTGGGGACATTGTGCATCTCGACCCTATATCGCCCCCTACAAGT
GCCCATCAACTCGGAACGATATGAGAGCTCTAGACAGAAAACCGATTTGG
CCGCCTCGATACTCCAGGAAGTGGGCATCATTCGGCACGGCGGACTGTCG
GATGCTTTAGCCAAAGGCCTGCTAACCGATGACTTTATAACTGGAGCCCG
CATTTTGGCCCTGAATCTAACGAATGGAGCGGTCCAGTCCTACGTCTGGT
GGGTCAAGGGAACAGCGGCGGAAATCCAGCGGTACGACGAGGACGGACTG
CAGATTGGCAAAAAGCCCGCTGGCAGTTATCCCTGGTTCGACGATGAAAC
ATCCTCACCCACCTTGCGTTCGCCCAAATTCGCGCCCAGTCCGCCCAACA
CTACTACAGGCTGGTGGACATATCCCTACTTCTCGTGCTCGCAGAGCCGC
TGGCTGGTGTCCTACAGCATTGCATTCCGCCGATTGGGCGCCATGGGGTA
AGGCTCATCAGCATCGACATGATGTGTCCACCGCTGCGGTACATGCGAGG
CGGGCCTATCCATTTGCAGTCGCGGCCGAAAATGCAGCACACTGCAGCCA
ATCGGTGGGGACGAGATCCTGTT
FMO13472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31760-RD | 4647 | CG31760-RD | 239..1342 | 9..1097 | 5065 | 98.1 | Plus |
| CG31760-RC | 4411 | CG31760-RC | 294..1397 | 9..1097 | 5065 | 98.1 | Plus |
| CG31760-RB | 4389 | CG31760-RB | 272..1375 | 9..1097 | 5065 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12153528..12153974 | 9..455 | 2235 | 100 | Plus |
| 2L | 23513712 | 2L | 12160689..12160884 | 642..837 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 12155471..12155659 | 455..643 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 12161244..12161448 | 835..1031 | 700 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:47:30 has no hits.
FMO13472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:23 Download gff for
FMO13472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RA | 263..1374 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:14 Download gff for
FMO13472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 267..1378 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:46 Download gff for
FMO13472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31760-RB | 267..1378 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:46 Download gff for
FMO13472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12153523..12153974 | 1..455 | 99 | -> | Plus |
| 2L | 12155472..12155658 | 456..642 | 100 | -> | Plus |
| 2L | 12160690..12160882 | 643..835 | 100 | -> | Plus |
| 2L | 12161245..12161524 | 836..1104 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:14 Download gff for
FMO13472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12153523..12153974 | 1..455 | 99 | -> | Plus |
| arm_2L | 12155472..12155658 | 456..642 | 100 | -> | Plus |
| arm_2L | 12160690..12160882 | 643..835 | 100 | -> | Plus |
| arm_2L | 12161245..12161524 | 836..1104 | 91 | | Plus |
