FMO13473.5prime Sequence
995 bp (992 high quality bases) assembled on 2013-02-11
> FMO13473.5prime
CAGTCGACATGCCCATCGACATGGATATACCAAAGGAAGCGGAGTCGAAC
GACAAGTTCATAGTAAAGTATCGCCAGCAGTATTACGATTTGTCCAGGTT
TATGCACAAGCATCCGGGAGGCATAAACACACTCAAAGGTCTCAACAGCG
GGGACATGACAGCTCGCTTCCTAAAGGCGCCGCCACATTCGGATGCGGCC
ATGTACTTGATGAGGGAGTACAAAATCGATCCAGAGGACTCTCGGAAACC
AAAGTCGAGCCAAAGGGAAACGTTGCATCACGATGAAGATGGGACTTTGC
GACAACGGCCCAGGGAAACGGAGGACAAGAACAATAACCAGGTGGACGAT
AGTATGGAGCACCTAGTGGACTGGTCTAAGGCAATGCTTCCGCAGATAGC
TAACATAACGGATTGCTACGATGAGTGGGTTCACAAGCCGGTGGACAGGC
CACTGCGTCTCTTTGACCCTTGGTACTTGGAGATGTGCACCAAGACGCCC
TGGTGGCTGGTGCCCCTGTTCTGGATACCAGTGATCGTGAAATGCGCCGT
GGAGGAGTTCACCACCGCCTGGCAGGATAGCAACCAGCTGGCTGTGTTCT
CCGGTTACTTTTTATTTGGCGTGCTCCTGTGGTCTTTCCTGGAGTACACA
CTGCACCGCTGGGTGTTCCACGTGAAGCTGAGCAACAAGAGCGGAAGTTG
GCTATGCACCTTCCACTTCATGATCCATGGCCTGCACCACAAAGGTGCCC
TTCGATCCGATGCGACTGGTGTTTCCGCCCCTTCCCGGCGCAGTGCTCGC
CGCGGTCATCTACACCCCGCTCAGCTTTGTCCTGTCCCATCCGCGAGTGA
TCTTGTCTGGAGCTCTGGGCCGGCTATCTGTGCTACGATATGATGCACTA
CTACCTGCACTATGGGAACCCTTCGCTATGGGCCTTTGTACAATGAAGCG
CTATCATCACACCACCACTTCTCGCACCAATTCTCGGTTACGGCT
FMO13473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fa2h-RB | 1399 | CG30502-RB | 120..1106 | 9..994 | 4805 | 99.4 | Plus |
| CG11125-RC | 2177 | CG11125-RC | 1600..1950 | 359..9 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7446482..7446892 | 994..585 | 1800 | 98.5 | Minus |
| 2R | 25286936 | 2R | 7449418..7449768 | 359..9 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 7446954..7447183 | 587..358 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:02 has no hits.
FMO13473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:35 Download gff for
FMO13473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30502-RB | 118..1104 | 9..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:39 Download gff for
FMO13473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fa2h-RB | 120..1106 | 9..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:06 Download gff for
FMO13473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fa2h-RB | 120..1106 | 9..995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:06 Download gff for
FMO13473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7446480..7446889 | 588..995 | 98 | <- | Minus |
| 2R | 7446954..7447181 | 360..587 | 100 | <- | Minus |
| 2R | 7449418..7449768 | 9..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:39 Download gff for
FMO13473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3333985..3334394 | 588..995 | 98 | <- | Minus |
| arm_2R | 3334459..3334686 | 360..587 | 100 | <- | Minus |
| arm_2R | 3336923..3337273 | 9..359 | 100 | | Minus |
