FMO13474.5prime Sequence
1134 bp (1007 high quality bases) assembled on 2013-02-11
> FMO13474.5prime
CAGTCGACATGACCGACAGCATCGCTGTGGACGACGGAGGAGTGGATGAG
TGTTGCGACTCCATCACCGAGCTGCCCAGCGCCTCGTTCCAGCTCCAGCA
TCTGGTCAAAGGACGTCCGAAGCGGGCCAAAACGCGTGCACCAACTCGGC
CGTTGGTCACCACCGAGTGCGCCGGGGGCAGCAGGGAAATTGGCGAAGGT
TTGGAACACTTCTTCCGGCCCGGTTCTGTTACGCCCACTACCCTGACTCC
CCTAGTTTCTCCAACGTCGGAGGAATGCAGCTCCTTGTCGTTTGTGGACA
GTCCCACGATGAGCCGCGATGGGAATGGACATATGACCTCCGAGGAGACC
ACTCCCATTCTGGAGGAACGCCGACCAATTAAATTGGAGCGCCAGTCGCC
ATTGCTCAAAAGTGCGTCATGGGCCACCCGCTCCCGGTCCACGGACAATC
TAGAGAAGTATTCGCCACTGGTGGGTCGTAAGTCCCCGCTGGTCAAGATG
CGAACTGAAGGAGGTCCCGGCTCGGGATCTGCCACCGGTGCTGAGGAGAC
GTCTATGCCCAGTTCTAATCTGCTTAAGGCAACCGCCCGAGAGGACAAAA
CGCGTTCGCCCAGCAGCGATTCGATCAAAAGCCATGCCGCAGGCGAGGGT
AGTGTTATTGTGAAGACTGGCAACGGCATCCTGCGAACACCCATAGTTCT
GCAGAAGCCGCGTCCGTGGTCGGTTGTTGGAAGCGAGCCAAAGGCAGGCG
GAGATCTTATTACAGGCAATGGGAATGCCGACTCCAGCAAGACCACGCCG
GACAAACTAGAAGAAGATGATGTCGAGATAGTGACATTTGGAAATACCTG
CAGTGGCTCATTGTGGCATCACGCCGGGCATAGCTTTTATCCACCAGTGG
CAGTGGAAGCATTGTGGGCATTACACCAGGAGGTGCCCTTTGAAAAGAGT
CTGTGCGAGAACTAGCAGCGGGTCTAAACCAGGATGGAACTCCCCCTTAA
GCCGCCCGTTATGCCAGACCCTGCTGAAACCGACTTATGTCGCCACAGCA
CGTTCCTCCTCAGGCTCCACCTCATATGTGTATTCAGTACGGCTCTATCC
CCGAACGCCCAACCACCTCGAGTGATCCGTATTT
FMO13474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RF | 6319 | CG1399-RF | 3739..4839 | 9..1109 | 4980 | 97.5 | Plus |
| CG1399-RD | 2893 | CG1399-RD | 313..1413 | 9..1109 | 4980 | 97.5 | Plus |
| CG1399-RC | 5968 | CG1399-RC | 3655..4755 | 9..1109 | 4980 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7678868..7679276 | 816..408 | 2030 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7679340..7679744 | 413..9 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 7678692..7678808 | 930..815 | 430 | 94.9 | Minus |
| 2R | 25286936 | 2R | 7678577..7678629 | 979..927 | 205 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:05 has no hits.
FMO13474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:36 Download gff for
FMO13474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 711..1800 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:40 Download gff for
FMO13474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RC | 3647..4736 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:08 Download gff for
FMO13474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RC | 3647..4736 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:08 Download gff for
FMO13474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7678570..7678623 | 933..987 | 92 | <- | Minus |
| 2R | 7678689..7678806 | 817..932 | 95 | <- | Minus |
| 2R | 7678868..7679272 | 412..816 | 100 | <- | Minus |
| 2R | 7679342..7679751 | 1..411 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:40 Download gff for
FMO13474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3566075..3566128 | 933..987 | 92 | <- | Minus |
| arm_2R | 3566194..3566311 | 817..932 | 95 | <- | Minus |
| arm_2R | 3566373..3566777 | 412..816 | 100 | <- | Minus |
| arm_2R | 3566847..3567256 | 1..411 | 99 | | Minus |
