FMO13475.5prime Sequence
1146 bp (1025 high quality bases) assembled on 2013-02-11
> FMO13475.5prime
CAGTCGACATGTCAAAATTGTTAGAGAAACACTTGCCGAAAAAGCCCGTG
AAAATGGACGAAACGAAGGATATGCGCTATAGTTTGGAGATCGACGAGGA
TTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGTTCTGGCCGTTAATT
CTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATACTATGTACGAGGCA
GGTGACTTGGAGCACTTGGACGATGGCGATGATAGCTTCAGTGCCTTTGA
GCGCATGTGCGACAAAACCGGTTCCGATCCGGATAGCACTCTTTTCCAGT
ACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCAGGGCTAGGGATCAT
AGCACCGACGATCAGAAAGAGATCGATGCACTGCGTCGCATGCTAGAGGC
AGTGGGTACAGAAGACGATCTATTGGAGAACGAAAGTCCCGTCAAGGGGG
CGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGTCGCGCTTTTGGGAC
AACACCCTGGCCGGAATGGACGAGACCTCATCCGACTCTGGGCTGACTCC
TAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGTGGGGCTGCTTCGCC
CCTCAACCATCATCGAAGACAGCGAACTGGAGTCGTCTGATGTGTCTTCA
CACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACAAATGCATCTAGTTC
TTACGAAACAGCCACGGATACTTCCCTCAGTGGAACGCTCCTAAACGTCG
ACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGCCACCAGGAATGTCC
AAGGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCATGGCAGTCTTAGAGA
GCTGGCCTCACTTCCGAAAGATGAGTCGAGGAGAAGAGGACGATATAGAG
GATACAATAATCGAGCTTTCCTCTTCTGACGATGAGAAGTGCAGCTAGTT
CCAGAAGTAAAACAAGAAGACCACGTCCCGTGTGTCCTTCAGTCCACGGA
AAGATCCCACTGAGCGAAAACAGCGGAGAAAAGCGTTGAAAATAACGAAA
ATCGTGCATTTCATGAACCATGGAGAATGGAGTACTGATGCCAAGGGTAT
GGAGTACTTGGGCAGGTGGGGGGCTCCTTCATCCGCCCAAGTACAG
FMO13475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RC | 2019 | CG9188-RC | 21..1152 | 8..1131 | 5125 | 97.7 | Plus |
| sip2-RD | 2021 | CG9188-RD | 44..1154 | 29..1131 | 5020 | 97.7 | Plus |
| sip2-RE | 2040 | CG9188-RE | 66..1173 | 32..1131 | 5005 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6962531..6963554 | 1052..32 | 4690 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:08 has no hits.
FMO13475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:37 Download gff for
FMO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 15..1165 | 1..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:42 Download gff for
FMO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 15..1165 | 1..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:09 Download gff for
FMO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RC | 15..1165 | 1..1145 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:09 Download gff for
FMO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6962447..6963554 | 32..1131 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:42 Download gff for
FMO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6962447..6963554 | 32..1131 | 97 | <- | Minus |
