Clone FMO13477 Report

Search the DGRC for FMO13477

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:134
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31606-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13477.5prime Sequence

617 bp (617 high quality bases) assembled on 2013-02-11

> FMO13477.5prime
CAGTCGACATGTCATTTCCTCGGATCATTTTTTTCCTTGTGTTGCTGGCA
TTTGCCAGGAGTGATCCTGTTGAAAGGAATACGGAAGCCATTTGCCAGTT
TTTCCAACACGTTCGAGCGTTTCAAGCAGACTGGTGGGAGGACTCAGTTA
TCCTGATGAAGAGAATGTTGGAGGAAATGGTCAATGCCCTAGAGCCCTAT
ATCGAATATGCAGAGTACAGGAAAACCATGCAGGACTATCTCGAGCATGG
AAAGACCATAGTTACGTCCAGTCGTTTGGAAGATAAGATGGCATTTGTTC
AAGGATTCAATGAACACGGTGACCAGCCAACTCTAGTCGGATCACCCTCC
AAGAGGCAGGCGCTCACCAGACCTCTAAACCATTTCCAATCGAATATGAT
TTCCAAAGTGTTCACTGAGTTCCATAAAAAACTGATCAAAGCTGCTGACG
ACTTGGAGCGAGTAGTGCGATTCCCGGATAACTCTGCTAGGGGGGAACTT
TTTGGGCTTCTCGAGCAATATCGGGCCAGTGGTATTGGAAGTATGACTGA
AGAGATAGCTTCTCGAATCCTGGCGCTAAAGGATAATTACCAGTGTGCCG
CAAGCTTTCTAGACCAT

FMO13477.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31606-RB 690 CG31606-RB 20..610 9..599 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8147724..8148276 47..599 2765 100 Plus
2L 23513712 2L 8147630..8147669 9..48 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:48:14 has no hits.

FMO13477.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:40 Download gff for FMO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31606-RB 1..594 9..600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:45 Download gff for FMO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31606-RB 20..610 9..599 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:11 Download gff for FMO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31606-RB 20..610 9..599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:11 Download gff for FMO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8147630..8147668 9..47 100 -> Plus
2L 8147725..8148276 48..599 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:45 Download gff for FMO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8147630..8147668 9..47 100 -> Plus
arm_2L 8147725..8148276 48..599 100   Plus