FMO13479.5prime Sequence
707 bp (707 high quality bases) assembled on 2013-02-11
> FMO13479.5prime
CAGTCGACATGGCACACAAGCGCCTGTTCGTCTACGCGGTGCTACTGGTG
ATATGTTATTTGGTTGGCGTGACATGGGCTGAGACTGCGGCGCAGACATT
CCCAGCGATCGGCACCAACAGCAACAACAACAGCAATGCTCAACCTGCTC
CTGTGCCTGCACCTGCAGCTCCAGCGGCTGCAGCTCCACTAGCCAAGCAA
GTTTCAGCTCCCACTGCCGCCCCTCCGGCCAAGGTCATCGGCCAGCCTGT
GCTCGCTGCTCCAGGCAAAAATTCTTCCAATTCCAGCAGCACAACTGAGT
GCGTCTGTGCCGGTGCCCTGCTGCCCCGTTTGGATGCCAATGGCAAGGAG
CTGCCCATATGCGCCGAGTGCAAGTGCTCCCATGTGGCGAGAAATACGAC
GCTGATAAAGGTCGTGGTCATTATTGTGATTTGGATCATCTCCATTTTAG
TAATATACATGCTCTTCCTGATGTGCCTGGACCCGTTGCTGAACAAGCGA
GTGAAGGCGAACTACCAGGAGCACACCAACGAAGATGATGAACCAACGCC
GCCCCTGCCAGCCGTCAACAACCAGGAGCTCAGTGCCAGAGCCAATGTCC
TCAATCGTGTGGGCCACCAGCAGGACAAGTGGAAGCGGCAGGTGCGCGAG
CAGAGACGCCACATCTACGACAGGCATACCATGCTAAACGCAAGCTTTCT
AGACCAT
FMO13479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1161-RA | 945 | CG1161-RA | 94..774 | 9..689 | 3405 | 100 | Plus |
| CG1161-RC | 1241 | CG1161-RC | 94..622 | 9..537 | 2645 | 100 | Plus |
| CG1161-RC | 1241 | CG1161-RC | 918..1070 | 537..689 | 765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5355326..5355550 | 77..301 | 1125 | 100 | Plus |
| 3R | 32079331 | 3R | 5356425..5356577 | 537..689 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 5356001..5356129 | 409..537 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 5355833..5355944 | 301..412 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 5355185..5355254 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6851 | 108..220 | 152 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2393 | 107..200 | 143 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2571 | 108..216 | 142 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2424 | 108..214 | 136 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2871 | 89..184 | 129 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6875 | 108..229 | 128 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6872 | 108..208 | 124 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2502 | 113..242 | 114 | 60 | Plus |
FMO13479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:41 Download gff for
FMO13479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1161-RA | 86..769 | 9..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:46 Download gff for
FMO13479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1161-RA | 94..777 | 9..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:12 Download gff for
FMO13479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1161-RA | 94..777 | 9..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:12 Download gff for
FMO13479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5355185..5355253 | 9..77 | 100 | -> | Plus |
| 3R | 5355327..5355550 | 78..301 | 100 | -> | Plus |
| 3R | 5355834..5355942 | 302..410 | 100 | -> | Plus |
| 3R | 5356003..5356128 | 411..536 | 100 | -> | Plus |
| 3R | 5356425..5356580 | 537..693 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:46 Download gff for
FMO13479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1180907..1180975 | 9..77 | 100 | -> | Plus |
| arm_3R | 1181049..1181272 | 78..301 | 100 | -> | Plus |
| arm_3R | 1181556..1181664 | 302..410 | 100 | -> | Plus |
| arm_3R | 1181725..1181850 | 411..536 | 100 | -> | Plus |
| arm_3R | 1182147..1182302 | 537..693 | 98 | | Plus |
