FMO13480.5prime Sequence
443 bp (-91 high quality bases) assembled on 2013-02-11
> FMO13480.5prime
CAATCCACATGTTTAGTTTTCTGAGCATTGAGGCTAGGTCATTGGAGGAA
ACCTCTGTCAAGACGAAACGCGATACCGACTGGTGGACTATCCTCGAGGA
TATACTCTATGACAATGATAGTGATAGTGATGATGCCGGCGATGACAACG
TTTTGATTTGTCTTAACTGCACGGTAGTTGTTCGAGCTGCTCCAAACGCC
ACAGCGAATGGAAGCACTGTAACTCCGCAGGCAAGTGGAACAGCTCCAGG
GAGTTCACCAGGTGCGCCTGCCACTCCTCCTGGCTCGACTCCTGCAGTTC
CAGCCACAGTTGCACCCGAAACGCCTGCTCCGTCGGCACCTGCGACATCG
CCACAACCTGTAGTAACTGCCCTACCCACAGCTGCCCCACCTACAGCTGC
CCCACCCACAGCTGCCCCTGGTGGTGCAAGCTTTCTAGACCAT
FMO13480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7443-RA | 616 | CG7443-RA | 62..478 | 9..425 | 1995 | 98.6 | Plus |
| CG7443-RB | 592 | CG7443-RB | 62..454 | 9..425 | 1640 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8324627..8324898 | 154..425 | 1285 | 98.2 | Plus |
| 3R | 32079331 | 3R | 8324485..8324573 | 65..153 | 430 | 98.9 | Plus |
| 3R | 32079331 | 3R | 8324377..8324433 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:20 has no hits.
FMO13480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:42 Download gff for
FMO13480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 39..465 | 5..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:49 Download gff for
FMO13480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 58..484 | 5..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:14 Download gff for
FMO13480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7443-RA | 58..484 | 5..433 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:14 Download gff for
FMO13480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8324373..8324433 | 5..65 | 96 | -> | Plus |
| 3R | 8324486..8324573 | 66..153 | 98 | -> | Plus |
| 3R | 8324627..8324904 | 154..433 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:49 Download gff for
FMO13480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4150095..4150155 | 5..65 | 96 | -> | Plus |
| arm_3R | 4150208..4150295 | 66..153 | 98 | -> | Plus |
| arm_3R | 4150349..4150626 | 154..433 | 96 | | Plus |
