FMO13486.5prime Sequence
1033 bp (999 high quality bases) assembled on 2013-02-11
> FMO13486.5prime
CAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGGCCAAGTTG
GCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAGGAGATCAA
GGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGGCATCGACA
AGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGGGCGTGGCC
CCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCGATGACTTC
GGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGCCACTGTCA
ATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCGTCTACAAT
GTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTACACAAAGCA
GACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCATGCTACGG
ATTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGGAGGATGAA
TTCACAGGAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAACGGATT
CACCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCACCGTTA
AGGACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGGAGACTGAA
GTGAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAAGCAGATGATCA
TACTGTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGTCATC
GAACGGGCCCTCTCGGAGAATGTGGACATATACACGGACTACATCGGCGG
CGGCGACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGGCTCTCGC
TGATCCGCGTCTTCTACGACGAGCGCTGGTCGAAGACCGCTGCATCACAG
CATGGACTGGTCCACCACTTTCCCCGAGCTGGTGGTGGGCTCGTACCACA
ACAACGCAGGAGAGTCCGACCGAGCCGGGACGGCGTGTTGATGGTGGGGA
ACCACAAGTTCAAGAAAAGACCGCCGGAGGACG
FMO13486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RD | 2889 | CG18000-RD | 200..1223 | 9..1033 | 4815 | 98.3 | Plus |
| sw-RL | 3032 | CG18000-RL | 343..1366 | 9..1033 | 4815 | 98.3 | Plus |
| sw-RM | 2873 | CG18000-RM | 347..1370 | 9..1033 | 4815 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20183313..20183682 | 1033..663 | 1420 | 95.2 | Minus |
| X | 23542271 | X | 20221820..20222189 | 1033..663 | 1420 | 95.2 | Minus |
| X | 23542271 | X | 20229694..20230063 | 1033..663 | 1420 | 95.2 | Minus |
| X | 23542271 | X | 20175486..20175855 | 1033..663 | 1405 | 94.9 | Minus |
| X | 23542271 | X | 20191037..20191406 | 1033..663 | 1405 | 94.9 | Minus |
| X | 23542271 | X | 20198753..20199122 | 1033..663 | 1405 | 94.9 | Minus |
| X | 23542271 | X | 20206477..20206846 | 1033..663 | 1405 | 94.9 | Minus |
| X | 23542271 | X | 20214138..20214507 | 1033..663 | 1405 | 94.9 | Minus |
| X | 23542271 | X | 20176238..20176395 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20184060..20184217 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20191789..20191946 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20199505..20199662 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20207229..20207386 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20214885..20215042 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20222567..20222724 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20230441..20230598 | 663..506 | 790 | 100 | Minus |
| X | 23542271 | X | 20235508..20235663 | 164..9 | 780 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 310..164 | 735 | 100 | Minus |
| X | 23542271 | X | 20234775..20234904 | 438..309 | 650 | 100 | Minus |
| X | 23542271 | X | 20178270..20178399 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20186145..20186274 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20201591..20201720 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20232116..20232165 | 508..459 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:33 has no hits.
FMO13486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:46 Download gff for
FMO13486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 524..1554 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:58 Download gff for
FMO13486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 340..1370 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:20 Download gff for
FMO13486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RM | 340..1370 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:20 Download gff for
FMO13486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20229694..20230062 | 664..1033 | 95 | <- | Minus |
| X | 20230441..20230596 | 508..663 | 100 | <- | Minus |
| X | 20232117..20232164 | 460..507 | 100 | <- | Minus |
| X | 20233423..20233443 | 439..459 | 100 | <- | Minus |
| X | 20234775..20234902 | 311..438 | 100 | <- | Minus |
| X | 20235288..20235434 | 164..310 | 100 | <- | Minus |
| X | 20235509..20235669 | 1..163 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:58 Download gff for
FMO13486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20100768..20101136 | 664..1033 | 95 | <- | Minus |
| arm_X | 20101515..20101670 | 508..663 | 100 | <- | Minus |
| arm_X | 20103191..20103238 | 460..507 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 439..459 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 311..438 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 164..310 | 100 | <- | Minus |
| arm_X | 20106583..20106743 | 1..163 | 97 | | Minus |
