FMO13487.5prime Sequence
1123 bp (1017 high quality bases) assembled on 2013-02-11
> FMO13487.5prime
CAGTCGACATGCCTGCTATTGGAATCGATCTGGGCACCACCTACTCCTGC
GTGGGTGTCTACCAGCATGGCAAGGTTGAGATTATCGCCAATGACCAGGG
CAACCGCACCACGCCGTCCTACGTGGCTTTCACAGACTCGGAACGCCTCA
TTGGTGATCCGGCCAAGAACCAGGTGGCCATGAACCCCAGAAACACAGTG
TTTGACGCCAAGCGACTCATCGGCCGAAAATACGACGATCCCAAAATCGC
AGAGGACATGAAGCACTGGCCTTTCAAAGTTGTAAGCGACGGCGGAAAGC
CCAAGATCGGGGTGGAGTATAAGGGTGAGTCCAAGAGATTTGCTCCCGAG
GAGATCAGTTCGATGGTGCTGACCAAGATGAAGGAGACGGCGGAGGCGTA
TCTGGGCGAGAGCATCACGGATGCAGTCATCACAGTTCCAGCTTACTTCA
ACGACTCTCAGCGCCAGGCTACCAAAGACGCCGGTCACATCGCCGGCCTG
AATGTGCTCCGCATCATCAATGAGCCCACGGCGGCAGCATTGGCCTACGG
ACTGGACAAGAATCTCAAGGATGAGCGCAATGTGCTTATCTTCGACTTGG
GCGGCGGCACCTTCGATGTCTCCATCCTGACCATCGACGAGGGATCTCTG
TTCGAGGTGCGCTCCACAGCCGGAGACACACACTTGGGCGGCGAGGACTT
TGACAACCGGCTAGTCACCCACCTGGCGGAGGAGTTCAAGCGCAAGTACA
AGAAGGATCTGCGCTCCAACCCTCGCGCCCTACGACGCCTCAGAACAGCA
GCTGAACGGGCCAAGCGCACACTCTCCTCTAGCACGGAGCCACCATCGAG
ATCGACGCATTGTTTGAGGGCCAAGACTTCTACACCAAAGTAAGCCGTGC
AGGTTTGAGGAGCTGTGCGCGGACCTCTTCGCAACACCCTGCAGCCTGGT
GGAGAGGCCCTCACGATGCCAAGAATGGACAAGGGTCAAATCACGACATC
GTGCTCGTCGGCGGATCCACTCGCATTCCCAAGGTGCAAAGTCTTGCTTG
CAGGAGTTCCTTCCACGGCAAGAACTTACTATCCATTCAACCAGAAAAGA
GGACAATGGCATTACGGACTGCT
FMO13487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp70Bbb-RA | 2347 | CG5834-RA | 243..1310 | 9..1075 | 5075 | 98.9 | Plus |
| Hsp70Bb-RA | 2347 | CG31359-RA | 243..1310 | 9..1075 | 5045 | 98.7 | Plus |
| Hsp70Bc-RA | 2386 | CG6489-RA | 243..1310 | 9..1075 | 5030 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12502752..12503819 | 9..1075 | 4825 | 98.4 | Plus |
| 3R | 32079331 | 3R | 12506035..12507102 | 9..1075 | 4795 | 98.2 | Plus |
| 3R | 32079331 | 3R | 12509318..12510385 | 9..1075 | 4780 | 98.1 | Plus |
| 3R | 32079331 | 3R | 12466518..12467557 | 1044..9 | 4770 | 98.6 | Minus |
| 3R | 32079331 | 3R | 11955250..11956289 | 1044..9 | 4320 | 95.7 | Minus |
| 3R | 32079331 | 3R | 11958789..11959828 | 9..1044 | 4320 | 95.7 | Plus |
| 3R | 32079331 | 3R | 24056074..24057104 | 1035..9 | 1820 | 79.3 | Minus |
| 3R | 32079331 | 3R | 15244372..15245118 | 12..761 | 1225 | 77.9 | Plus |
| 3R | 32079331 | 3R | 13045581..13046163 | 170..752 | 920 | 77.2 | Plus |
| 3L | 28110227 | 3L | 13975966..13976596 | 254..886 | 490 | 72.6 | Plus |
| 3L | 28110227 | 3L | 13974590..13974767 | 19..196 | 440 | 83.1 | Plus |
| X | 23542271 | X | 11803871..11804160 | 637..345 | 425 | 77.1 | Minus |
| 3R | 32079331 | 3R | 13044979..13045131 | 24..176 | 360 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:36 has no hits.
FMO13487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:47 Download gff for
FMO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bbb-RA | 235..1324 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:01 Download gff for
FMO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bbb-RA | 235..1324 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:22 Download gff for
FMO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp70Bbb-RA | 235..1324 | 1..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:22 Download gff for
FMO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12502744..12503840 | 1..1093 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:01 Download gff for
FMO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8328466..8329562 | 1..1093 | 98 | -> | Plus |
