FMO13488.5prime Sequence
1069 bp (1022 high quality bases) assembled on 2013-02-11
> FMO13488.5prime
CAGTCGACATGAGCGGACAAGCGGATATTGCCCTCATCGGCCTGGCCGTC
ATGGGCCAAAACCTGATACTCAACATGGACGAGAAGGGATTCGTGGTGTG
CGCCTACAACCGCACGGTGGCCAAGGTCAAGGAGTTCCTCGCCAATGAGG
CTAAGGACACCAAAGTGATTGGAGCCGACTCGCTCGAGGACATGGTCTCC
AAGCTGAAGAGCCCCCGGAAGGTCATGCTGCTGGTCAAGGCTGGAAGTGC
AGTCGACGACTTCATCCAGCAGCTGGTGCCGCTGCTTTCCGCCGGCGATG
TGATCATCGATGGTGGCAACTCGGAGTATCAGGACACATCTCGCCGCTGC
GACGAGTTAGCCAAACTTGGCCTGCTCTTCGTCGGATCCGGCGTGAGCGG
TGGCGAGGAGGGCGCCCGCCACGGACCCTCGCTGATGCCCGGCGGACACG
AGGCCGCGTGGCCCCTTATCCAACCCATCTTCCAGGCGATCTGCGCCAAG
GCCGACGGTGAACCCTGCTGCGAGTGGGTGGGCGATGGAGGCGCCGGTCA
CTTCGTCAAGATGGTGCACAACGGCATCGAATACGGTGACATGCAGCTGA
TCTGCGAGGCGTACCACATCATGCAGAGCCTGGGACTGTCGGCTGACCAG
ATGGCAGACGAGTTCGGCAAGTGGAACTCGGCCGAACTGGACTCCTTCCT
CATTGAAATCACGCGTGATATTCTTAAGTACAAGGACGGCAAAGGTTATC
TGCTGGAGCGGATTCGCGATACCGCCGGCCAGAAGGGCACGGGCAAGTGG
ACGGCAATCGCTGCTCTGCAGTATGGAGTGCCTGTGACGCTAATTGGCGA
GGCGGTCTTCTCGCGATGCCTGTCTGCCCTGAAGGACGAGCGCGTCCAGG
CCAGCAGCGTGCTGAAGGACCCTCGACCAAGCGCAGTGCCAACCTCACCA
GTTCCTCGACGACATCAAGCACGCTCTTCTACTGCCCAAGATCGGGTCCT
ACGCCCATGGATCATGCTCTGCCAGAAGCGGCCAGGGAAAACAGTGGAAA
ATTAATTTAGGGCGATTTG
FMO13488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgd-RB | 1668 | CG3724-RB | 43..1101 | 7..1057 | 4945 | 98.4 | Plus |
| Pgd-RA | 1895 | CG3724-RA | 270..1328 | 7..1057 | 4945 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2147174..2147984 | 240..1043 | 3540 | 98 | Plus |
| X | 23542271 | X | 2145489..2145713 | 16..240 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:39 has no hits.
FMO13488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:48 Download gff for
FMO13488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 262..1328 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:03 Download gff for
FMO13488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 262..1328 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:24 Download gff for
FMO13488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgd-RA | 262..1328 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:24 Download gff for
FMO13488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2145489..2145713 | 16..240 | 100 | -> | Plus |
| X | 2147175..2147999 | 241..1057 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:03 Download gff for
FMO13488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2039522..2039746 | 16..240 | 100 | -> | Plus |
| arm_X | 2041208..2042032 | 241..1057 | 97 | | Plus |
