FMO13489.5prime Sequence
1128 bp (1035 high quality bases) assembled on 2013-02-11
> FMO13489.5prime
CAGTCGACATGGAAAAGCACCCGAGTCTGTCCCAGCGGATGGGTACCACT
TACCGTCCGAGGAAGGGCCTGAAGTGTCTGTCATTCGAGTTCCAGTGCCG
CCTGCTTCTCCACCATCTGCTGCTAACGTCGCTGAGTGGCCGGCATTTCG
TATACGCCACTAGTGCCGTCGGGGGGGCGCTGAGTGCCAACAACTGTCAC
GACATCCACCACGGATTCGATGTCTACCCCAATCTCACGGCCGTATCGCT
GGCTCAATCGACGGACACGCCCCTGACCGCGACGATGCCACGGTCCGCCT
GGAAGTGTTGTTGCTGGAATGCAAGTAATCAAGCGGAGGAGGTGGAGTGC
CGCTGCGAGGGCGATGGACTGAATCGCGTACCGCAAACCCTGACGCTGCC
CATACAGCGTCTAACTATCGCATCGGCGGGGCTGCCACGCCTACGCCACA
CGGGGCTGAAGGTCTACGGATCCACGTTGCTGGATGTGGCCTTCACCGAC
TGCCTGCAGCTGGAACTGATACAGGATGGCGCTTTTGCTAATTTAACCCT
ATTGCGAACAATCTACATCACCAACGCACCCAAGCTGACTTTCCTCTCGA
AGGACGTATTCCTTGGCATTTCGGACACCGTGGACATTATACGAATCATA
AATAGTGGCCTGACCAGAGTTCCTGACTTGGGCCACCTGCCACCTCATAA
TATTCTGCAAATGATAGATCTCGATAACAATCAAATCACTCGGATAGACA
GTAAATCTATAAAAGTAAAGACTGCCCAATTAATTTTGACAAACAATGAA
ATAAGCTACGTTGATGACTCCGCTTTCTTCGGCTCCAAGATAGCCAAACT
ATCGCTGAAGGAAAACAAAAAACTGCAAATGATGCATCCCACGCATTCGA
TGGCATCATAGACATAACTGACTCGATCTCTCAGCACCTCGTTAGTTGGG
CTTCCTTCTGCCGGACTTCAGACATCGAAGCGTGTACATTCAGAACACCC
ACACTTTAAGACCATACCATTCATTCTACAACTTCCGGAATCTGCGAGGG
CTATTCCCACCCCATCCTTTCCATGGCTTGCGCTTCCAGTTCATCTCGGC
ACGATCTTACGACGCAACGAAGCTGGTA
FMO13489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lgr1-RB | 3222 | CG7665-RB | 335..1440 | 8..1106 | 5080 | 98 | Plus |
| Lgr1-RA | 3152 | CG7665-RA | 265..1370 | 8..1106 | 5080 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17728382..17728707 | 8..333 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 17729214..17729369 | 333..488 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 17729612..17729689 | 563..640 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 17729457..17729531 | 488..562 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730167..17730241 | 641..715 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 17730432..17730500 | 782..850 | 345 | 100 | Plus |
| 3R | 32079331 | 3R | 17730303..17730368 | 716..781 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 17730707..17730815 | 932..1038 | 320 | 94.5 | Plus |
| 3R | 32079331 | 3R | 17730556..17730627 | 851..921 | 310 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 18:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3517..3553 | 140..104 | 113 | 78.4 | Minus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7555..7627 | 735..810 | 112 | 63.2 | Plus |
FMO13489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:49 Download gff for
FMO13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsh-RA | 506..1630 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:05 Download gff for
FMO13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lgr1-RA | 255..1379 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:26 Download gff for
FMO13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lgr1-RA | 255..1379 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:26 Download gff for
FMO13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17728372..17728706 | 1..332 | 98 | -> | Plus |
| 3R | 17729214..17729368 | 333..487 | 100 | -> | Plus |
| 3R | 17729457..17729531 | 488..562 | 100 | -> | Plus |
| 3R | 17729612..17729689 | 563..640 | 100 | -> | Plus |
| 3R | 17730167..17730241 | 641..715 | 100 | -> | Plus |
| 3R | 17730303..17730368 | 716..781 | 100 | -> | Plus |
| 3R | 17730432..17730500 | 782..850 | 100 | -> | Plus |
| 3R | 17730556..17730630 | 851..923 | 97 | -> | Plus |
| 3R | 17730698..17730815 | 924..1038 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:05 Download gff for
FMO13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13554094..13554428 | 1..332 | 98 | -> | Plus |
| arm_3R | 13554936..13555090 | 333..487 | 100 | -> | Plus |
| arm_3R | 13555179..13555253 | 488..562 | 100 | -> | Plus |
| arm_3R | 13555334..13555411 | 563..640 | 100 | -> | Plus |
| arm_3R | 13555889..13555963 | 641..715 | 100 | -> | Plus |
| arm_3R | 13556025..13556090 | 716..781 | 100 | -> | Plus |
| arm_3R | 13556154..13556222 | 782..850 | 100 | -> | Plus |
| arm_3R | 13556278..13556352 | 851..923 | 97 | -> | Plus |
| arm_3R | 13556420..13556537 | 924..1038 | 94 | == | Plus |
