FMO13492.5prime Sequence
1137 bp (1032 high quality bases) assembled on 2013-02-11
> FMO13492.5prime
CAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTATGTAGTTTT
CGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATGTCAGCCAG
CAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGAGGACATGC
TTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACCAGGACACG
GACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCGGGTGACGC
CAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCCCAACTCCT
TCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCGCCGACTCC
ACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAACAAGGCGTC
CATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCATCCCCCAGC
TCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATACATCACTCC
CGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAATGTGCGCGC
CCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCCGAGCAGCC
AACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCCAAGAGTTC
CCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCCATGAACAC
CTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCACAAGAAGC
AGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCCAACTAGGC
GCCTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGCCAGATCTA
CTACTTGAATCATACTACAAAATCTACGCAGTGGAGGATCCCAGAATCCA
ATATCGCCAGCAGCAGCAATCTTGATGGCGAGCGAATAAAGCAGGATGAT
GTTTTGCAACTACAAACAAACTACCACATCGACCATTGCTAACATTTGGG
TCACTGCCGGATGGTTGGGGAGCAAGCAGTACCGGAGTTCGGAGATCTTT
TACCTTTATAATTCCCATGATCGAACGACTCATGGGATGATCCCGAAATG
CCATCTGGCTAACGGTTCGCACTGGCCCGATACCTTA
FMO13492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1525 | CG4005-RF | 171..1276 | 9..1108 | 5065 | 97.9 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1211 | 9..1108 | 5065 | 97.9 | Plus |
| yki-RD | 1369 | CG4005-RD | 171..1114 | 9..949 | 4630 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 859..9 | 4255 | 100 | Minus |
| 2R | 25286936 | 2R | 24067163..24067254 | 948..860 | 295 | 95.7 | Minus |
| 2R | 25286936 | 2R | 24066561..24066699 | 1101..964 | 230 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:48 has no hits.
FMO13492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:52 Download gff for
FMO13492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RF | 166..1276 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:09 Download gff for
FMO13492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..1211 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:30 Download gff for
FMO13492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..1211 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:30 Download gff for
FMO13492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24067163..24067254 | 860..948 | 95 | <- | Minus |
| 2R | 24067465..24068320 | 1..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:09 Download gff for
FMO13492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19954686..19954777 | 860..948 | 95 | <- | Minus |
| arm_2R | 19954988..19955843 | 1..859 | 99 | | Minus |
