FMO13493.5prime Sequence
770 bp (770 high quality bases) assembled on 2013-02-11
> FMO13493.5prime
CAGTCGACATGACTGATTTAAAGTTAACTGTGGCACTAACCAGCGTTAAT
GCGGAGAATATGTCGCGGCACGACATGCTTCAGTGGGTGAACAACATGGT
CCACGGCCACTTCAAGAAGATCGAAGAGCTGTGCTCAGGTGCTGCCTACT
GCCAGATGATGGAGATGATCTTTCCCAACTGCATTAACCTGAAGCGCGTC
AAGATGACCGCCAAACTAGAGCACGAGTATCTACACAATCTTAGGCTCTT
CCAGGAAGCCTTCAATCGCTTGAAGCTGGACAAAACGGTGCCAATCGATC
GACTGATCAAGGGACGCTTCCAGGACAACTTTGAGTTCCTGCAGTGGTTC
AAGAAGTTCTTCGACTCGCAGGCTCCGGGCTTGGAGAACATTAAGTCGCT
GGCCAATGCGCCGTTGGCAAAGCCCATAAAGCCGCGCCAATTCGCCAAGG
AGCGATCACCAGTCAACGCCAATGATGATGCGCTCAAAGAGCTGATTGAT
GAAATGAAGAACCTAAGCCTGAAGCGGGAGGACATCATGGAGGCCAGCAA
TCAGATCTACAACAAACTGCGCCTGGTCGAGGATTTGGTCAACGACATGA
TCAACAACAACCAGCTAGTTGAGTTGTGCAAACGCATTCAAGCGGTGCTC
TACAAAACGATAGATGGTGAAATCAACGAGGAACCCGTCGAGGTTAATGA
GGATAATGGTGATGAAGGCGCCGAACACGCGGATCCCAATGACGGATTAT
ATGCAAGCTTTCTAGACCAT
FMO13493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18190-RB | 1077 | CG18190-RB | 281..1024 | 9..752 | 3690 | 99.7 | Plus |
| Eb1-RF | 1891 | CG3265-RF | 480..543 | 302..365 | 200 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18851960..18852576 | 752..136 | 3055 | 99.7 | Minus |
| 2R | 25286936 | 2R | 18852632..18852763 | 140..9 | 660 | 100 | Minus |
| 2R | 25286936 | 2R | 6753244..6753307 | 302..365 | 200 | 87.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:51 has no hits.
FMO13493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:53 Download gff for
FMO13493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18190-RB | 227..970 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:11 Download gff for
FMO13493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18190-RB | 281..1024 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:31 Download gff for
FMO13493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18190-RB | 281..1024 | 9..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:31 Download gff for
FMO13493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18851958..18852573 | 139..753 | 99 | <- | Minus |
| 2R | 18852634..18852763 | 9..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:11 Download gff for
FMO13493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14739463..14740078 | 139..753 | 99 | <- | Minus |
| arm_2R | 14740139..14740268 | 9..138 | 100 | | Minus |
