FMO13494.5prime Sequence
821 bp (821 high quality bases) assembled on 2013-02-11
> FMO13494.5prime
CAGTCGACATGGCCGAACTGGACGATTTCTTCGCGAAAAAGGACAAGAAG
AAGTCCAAGAACAAGACTAAGTTCGTGACCGCCGACGAGATGGTGAAGAA
CCTGGAGGACGGCACCAAGCGCGAGGTGGTCAAGCCCAAAAAACCTGAGG
TAGCCGCTGGCGGCGTGGCAGTAGTAGGCGAAAACGAGAATAGCGGCACC
AAGGTGCCAGAGTCCGCCCCGCCCGTCGAGGAGGAATGGAAGGAGTTCGA
GGAGGAGCAGCGCAAGGACTACAGTGGCTTAAAGATCGGCCAGCTGAGCA
CCATAACTGCCCAGGAAAGTTCCGAGTCGCAAGCTGCTCGAGTGCCCTCT
GCCCCGGACGGCGGCAACTACAATGAGGACGATGAGGACAGCAATGGGTA
TGACAACGCGGACGTAAACAAGGAGCGCGTCGGCCACGGACCCTGGAAAA
AAGTTGTCCCAGCCGAGGAGGTAATGCAGATTCCGGTGCCCGTGGAGGTG
GAAAAGCACTCGTCCAAGACCTACGTTTCACCCGCGCTACGATACAGCCA
GCAGGCCGGAAGTGGACTGGGAGGCGGCCCTACTGGGGGGGCATTGCGTC
CACGACGCGCCGCCCCCGACATCACCAATACCGAGTTTTTCCCAACACTA
AGTGCGGCGCGTCCGGAGGAACAGCGCAAGAAGAAAAACGAACCCGCCTT
CGAAGAAGTCCGTCACGGAAGCCGGTTCCAGCGTGTTCAGGAGTCCACGG
CTGCCCCGGTGGCGGCCTCCAACCGATTCCAGTCGCTTGACGACGAAGCA
AGCGCAAGCTTTCTAGACCAT
FMO13494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-RC | 1240 | CG3760-RC | 201..996 | 8..803 | 3920 | 99.5 | Plus |
| CG3760-RB | 1128 | CG3760-RB | 89..884 | 8..803 | 3920 | 99.5 | Plus |
| CG3760-RD | 1039 | CG3760-RD | 89..881 | 8..803 | 3865 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24939271..24939525 | 549..803 | 1230 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24938970..24939217 | 301..548 | 1210 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24938460..24938673 | 8..221 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 24938759..24938842 | 221..304 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:26 has no hits.
FMO13494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:44 Download gff for
FMO13494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 117..917 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:54 Download gff for
FMO13494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 84..884 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:17 Download gff for
FMO13494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RB | 84..884 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:17 Download gff for
FMO13494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24938455..24938673 | 1..221 | 98 | -> | Plus |
| 2R | 24938760..24938842 | 222..304 | 100 | -> | Plus |
| 2R | 24938974..24939217 | 305..548 | 99 | -> | Plus |
| 2R | 24939271..24939525 | 549..803 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:54 Download gff for
FMO13494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20825978..20826196 | 1..221 | 98 | -> | Plus |
| arm_2R | 20826283..20826365 | 222..304 | 100 | -> | Plus |
| arm_2R | 20826497..20826740 | 305..548 | 99 | -> | Plus |
| arm_2R | 20826794..20827048 | 549..803 | 98 | | Plus |
