FMO13495.5prime Sequence
1008 bp (978 high quality bases) assembled on 2013-02-11
> FMO13495.5prime
CAGTCGACATGAGATCCCTAAGTCTGTTGCTACTCAGCGCCAGCTGCGCG
CTAATCATAAGCTTAGCCTACGCCCATCCCCCCGAGGGAGTGTGGAAGAA
GAAGCTCACCTGGAAGGAGGATTGGGTCCAGGTGTGGAAGACCGTTAAGA
AGGAGGCGTGGGAAACCAAGTGGAAGAAGGTTTCGGTCCCAATATGGAAG
GAAGTCAAGGTTCCCGTCTGGAAGGAGGAGAAGGTTCCCGACTGGAAGAT
CGTAAAGAAGCCGAAAATTGAGGAGAGAGAGGTGCCTGCCTGGAAGGAGG
TTAAGGTGGCCGAATGGAAGAAGATAACGAAACCCATTTGGGTGCCCACA
AAGGTCGCCGTCTGGAAGGAAATCCAGGTGCCCATTTGGAAGGAAGTGCA
GGTCCCGTACTGGAAGGAAATACAAGTGCCCATTTGGAAGGAAGTACAGG
TCGCAGACTGGAAGCAAATGTTTGAGCCCCAATGGGTGAAAATGGGCATT
CCCGGCGAAAAGTTCTTGGGTAAGGACCACGAGGGCTGGGAGTACACCAG
CCACGATCTCTGGCGCAAGAAGCTGATCTGGAAGCCCGTGTGGAAGAAGG
TCTGGCGCACCGAGAAGAAGCAGGAGTGGAAGACCGAGAAGAAGCAGGAG
TGGCGCACCGAGAAGAAGCAGGAATGGAAGACGGAGAAGGTGCAGGAGTG
GAAGCAGGACAAGAAGCTGGAGTGGAAGGACGAGTGGGATCCAGGTGTGG
AAGCCCGTGAAGAAACAAATCTGGATTAAGGAGAAGCGCGAGACCTGGAT
CGAGGAGAAGGTTCAGATCTGGCGCACCGAGAAGCGCCAGGTGTGGGCCA
CCGAGAAGCGGCAGGCGTGGAAAGGACGAGTGGCAGTCGGTCAACGTGCC
CGTCTGGAACGAGTCAAGGTGCAGAGTGGAGAAGGTGTGAAGCCCGTCTG
GGAGAAGGTGTTGGTTGCCATGAGCCATGCCCCGGATGTACGCAGCTTTC
TAGAACAT
FMO13495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12164-RB | 1554 | CG12164-RB | 88..1071 | 8..988 | 4665 | 98.8 | Plus |
CG12164-RA | 1404 | CG12164-RA | 88..1071 | 8..988 | 4665 | 98.8 | Plus |
CG12164-RB | 1554 | CG12164-RB | 707..833 | 579..705 | 230 | 80.6 | Plus |
CG12164-RA | 1404 | CG12164-RA | 707..833 | 579..705 | 230 | 80.6 | Plus |
CG12164-RB | 1554 | CG12164-RB | 659..760 | 627..728 | 225 | 82.5 | Plus |
CG12164-RA | 1404 | CG12164-RA | 659..760 | 627..728 | 225 | 82.5 | Plus |
CG15615-RB | 1429 | CG15615-RB | 644..754 | 495..605 | 210 | 79.3 | Plus |
CG12164-RB | 1554 | CG12164-RB | 432..501 | 400..469 | 200 | 87.3 | Plus |
CG12164-RB | 1554 | CG12164-RB | 480..549 | 352..421 | 200 | 87.3 | Plus |
CG12164-RA | 1404 | CG12164-RA | 432..501 | 400..469 | 200 | 87.3 | Plus |
CG12164-RA | 1404 | CG12164-RA | 480..549 | 352..421 | 200 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7312506..7313002 | 485..979 | 2105 | 97.6 | Plus |
2R | 25286936 | 2R | 7312174..7312453 | 208..487 | 1400 | 100 | Plus |
2R | 25286936 | 2R | 7311931..7312113 | 29..211 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7312630..7312725 | 633..728 | 225 | 82.3 | Plus |
2R | 25286936 | 2R | 7312654..7312749 | 609..704 | 225 | 82.3 | Plus |
2R | 25286936 | 2R | 7312648..7312774 | 579..705 | 215 | 78 | Plus |
2R | 25286936 | 2R | 7312600..7312674 | 627..701 | 210 | 85.3 | Plus |
2R | 25286936 | 2R | 7312328..7312387 | 410..469 | 195 | 88.3 | Plus |
2R | 25286936 | 2R | 7312376..7312435 | 362..421 | 195 | 88.3 | Plus |
2R | 25286936 | 2R | 16793966..16794028 | 557..495 | 195 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:29 has no hits.
FMO13495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:45 Download gff for
FMO13495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12164-RA | 71..1058 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:56 Download gff for
FMO13495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12164-RA | 84..1071 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:19 Download gff for
FMO13495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12164-RA | 84..1071 | 1..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:19 Download gff for
FMO13495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7311932..7312111 | 30..209 | 100 | -> | Plus |
2R | 7312176..7312451 | 210..485 | 100 | -> | Plus |
2R | 7312507..7313012 | 486..988 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:56 Download gff for
FMO13495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3199437..3199616 | 30..209 | 100 | -> | Plus |
arm_2R | 3199681..3199956 | 210..485 | 100 | -> | Plus |
arm_2R | 3200012..3200517 | 486..988 | 97 | | Plus |