Clone FMO13495 Report

Search the DGRC for FMO13495

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:134
Well:95
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12164-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13495.5prime Sequence

1008 bp (978 high quality bases) assembled on 2013-02-11

> FMO13495.5prime
CAGTCGACATGAGATCCCTAAGTCTGTTGCTACTCAGCGCCAGCTGCGCG
CTAATCATAAGCTTAGCCTACGCCCATCCCCCCGAGGGAGTGTGGAAGAA
GAAGCTCACCTGGAAGGAGGATTGGGTCCAGGTGTGGAAGACCGTTAAGA
AGGAGGCGTGGGAAACCAAGTGGAAGAAGGTTTCGGTCCCAATATGGAAG
GAAGTCAAGGTTCCCGTCTGGAAGGAGGAGAAGGTTCCCGACTGGAAGAT
CGTAAAGAAGCCGAAAATTGAGGAGAGAGAGGTGCCTGCCTGGAAGGAGG
TTAAGGTGGCCGAATGGAAGAAGATAACGAAACCCATTTGGGTGCCCACA
AAGGTCGCCGTCTGGAAGGAAATCCAGGTGCCCATTTGGAAGGAAGTGCA
GGTCCCGTACTGGAAGGAAATACAAGTGCCCATTTGGAAGGAAGTACAGG
TCGCAGACTGGAAGCAAATGTTTGAGCCCCAATGGGTGAAAATGGGCATT
CCCGGCGAAAAGTTCTTGGGTAAGGACCACGAGGGCTGGGAGTACACCAG
CCACGATCTCTGGCGCAAGAAGCTGATCTGGAAGCCCGTGTGGAAGAAGG
TCTGGCGCACCGAGAAGAAGCAGGAGTGGAAGACCGAGAAGAAGCAGGAG
TGGCGCACCGAGAAGAAGCAGGAATGGAAGACGGAGAAGGTGCAGGAGTG
GAAGCAGGACAAGAAGCTGGAGTGGAAGGACGAGTGGGATCCAGGTGTGG
AAGCCCGTGAAGAAACAAATCTGGATTAAGGAGAAGCGCGAGACCTGGAT
CGAGGAGAAGGTTCAGATCTGGCGCACCGAGAAGCGCCAGGTGTGGGCCA
CCGAGAAGCGGCAGGCGTGGAAAGGACGAGTGGCAGTCGGTCAACGTGCC
CGTCTGGAACGAGTCAAGGTGCAGAGTGGAGAAGGTGTGAAGCCCGTCTG
GGAGAAGGTGTTGGTTGCCATGAGCCATGCCCCGGATGTACGCAGCTTTC
TAGAACAT

FMO13495.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12164-RB 1554 CG12164-RB 88..1071 8..988 4665 98.8 Plus
CG12164-RA 1404 CG12164-RA 88..1071 8..988 4665 98.8 Plus
CG12164-RB 1554 CG12164-RB 707..833 579..705 230 80.6 Plus
CG12164-RA 1404 CG12164-RA 707..833 579..705 230 80.6 Plus
CG12164-RB 1554 CG12164-RB 659..760 627..728 225 82.5 Plus
CG12164-RA 1404 CG12164-RA 659..760 627..728 225 82.5 Plus
CG15615-RB 1429 CG15615-RB 644..754 495..605 210 79.3 Plus
CG12164-RB 1554 CG12164-RB 432..501 400..469 200 87.3 Plus
CG12164-RB 1554 CG12164-RB 480..549 352..421 200 87.3 Plus
CG12164-RA 1404 CG12164-RA 432..501 400..469 200 87.3 Plus
CG12164-RA 1404 CG12164-RA 480..549 352..421 200 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7312506..7313002 485..979 2105 97.6 Plus
2R 25286936 2R 7312174..7312453 208..487 1400 100 Plus
2R 25286936 2R 7311931..7312113 29..211 915 100 Plus
2R 25286936 2R 7312630..7312725 633..728 225 82.3 Plus
2R 25286936 2R 7312654..7312749 609..704 225 82.3 Plus
2R 25286936 2R 7312648..7312774 579..705 215 78 Plus
2R 25286936 2R 7312600..7312674 627..701 210 85.3 Plus
2R 25286936 2R 7312328..7312387 410..469 195 88.3 Plus
2R 25286936 2R 7312376..7312435 362..421 195 88.3 Plus
2R 25286936 2R 16793966..16794028 557..495 195 87.3 Minus
Blast to na_te.dros performed on 2014-11-28 18:48:29 has no hits.

FMO13495.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:59:45 Download gff for FMO13495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 71..1058 1..988 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:56 Download gff for FMO13495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 84..1071 1..988 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:19 Download gff for FMO13495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12164-RA 84..1071 1..988 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:19 Download gff for FMO13495.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7311932..7312111 30..209 100 -> Plus
2R 7312176..7312451 210..485 100 -> Plus
2R 7312507..7313012 486..988 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:56 Download gff for FMO13495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3199437..3199616 30..209 100 -> Plus
arm_2R 3199681..3199956 210..485 100 -> Plus
arm_2R 3200012..3200517 486..988 97   Plus