FMO13496.5prime Sequence
1099 bp (1020 high quality bases) assembled on 2013-02-11
> FMO13496.5prime
CAGTCGACATGGCTGGGACTTTTACCCCGCTGTTCTTCGTCTTTCTGCGG
AAGAATTTGCTCTACTTGCAACGCAACTTGCTGCCCCTGCTCCTTATCTG
CTCCGGATTTGCCGGAGTACTCACCGCGTACCTCCACTGGTCCGTCAAGC
CCGTGCTTCACCAAATTAACCAGTTTGAAGCAAAGAATGAAATGGTTCTT
AGAGAATTGTACTTTCCCGGTAATGAGCTGGATTACATTTACTACTCACC
CATCTCTCCCAATGTAGAGGACATTATGGATCTCCTGCGTGTAGATCTGG
GAATTATACCAGAGCGACTTCGGCCCAACAACAACAGCTTCGAGATGCAG
CTGGAGATGGAGCAACAGTGCCGTGGAAGCTGCTTCGCAATTGACTTCCA
CCGGGTACCGAACCGTGGCTCTGACAGAAAGTTCCGATACAGCCTCAGCT
CAAATCAGATGCGCATTTCGCCCAGAAAGCGATTTGTGAACGACGAGGAA
ATTTATCACCAGATAGATGATGATGATTATATTCGTTCCGGATTCCTGTC
CTTGCAACACATATTGGACAAACAGTATATGAAATACCAGGAGCTCGGGA
AAGACTTTGAGGTGGTGGTCAGCTCGATGCCCAACATGGAGGTCATCAGC
ATGGATAGTCATCGATTGACATATTTCGGAACACTGTGCAGCATTCTATT
CAATGTGGTCCTACTAAGCAGCTTTGTGGTGCCCTTTGTGGAGGAGAAGC
AAAACGGACTGAAGGAGTTTCTCAACCTGGTCACGCCCATGAGTTTCCTC
AACGGCCTCACTTTCTTTCTCATTCGGTTTGTGTGCTACACATTGCTTAT
GATCTTTGTCCTGTCGTTGCATATTTATACAAGGCCCTGGGCTCCATCTG
CTTTGCTTACGTGGCAGTGTGTTTCTGCTTTACATTTTGTCAACCATGTC
GTATGCTTATCTGATCTCTATTTGCTTCCACCTCAGTTTTCTATGCGAAA
TCGGAGGGCTGGCCAATGCCTAAAATTCCCTATGCATTCTCATTTGTTCG
AGCTGGCCACATCCGCTGCCATTTGGTTGTTTTTAAACCGAAACCTTCT
FMO13496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31731-RC | 1589 | CG31731-RC | 87..1163 | 9..1083 | 5110 | 98.8 | Plus |
| CG31731-RB | 5141 | CG31731-RB | 87..1163 | 9..1083 | 5110 | 98.8 | Plus |
| CG16890-RD | 1184 | CG16890-RD | 1..53 | 177..125 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13785049..13785517 | 515..981 | 2245 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13784786..13784986 | 316..516 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 13784170..13784352 | 9..191 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 13784471..13784595 | 192..316 | 625 | 100 | Plus |
| 2L | 23513712 | 2L | 13785577..13785644 | 984..1051 | 200 | 92.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:36 has no hits.
FMO13496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:14 Download gff for
FMO13496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RB | 76..1158 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:18 Download gff for
FMO13496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RB | 81..1163 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:06 Download gff for
FMO13496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31731-RB | 81..1163 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:06 Download gff for
FMO13496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13784164..13784352 | 1..191 | 97 | -> | Plus |
| 2L | 13784471..13784594 | 192..315 | 100 | -> | Plus |
| 2L | 13784786..13784986 | 316..516 | 100 | -> | Plus |
| 2L | 13785051..13785521 | 517..986 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:18 Download gff for
FMO13496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13784164..13784352 | 1..191 | 97 | -> | Plus |
| arm_2L | 13784471..13784594 | 192..315 | 100 | -> | Plus |
| arm_2L | 13784786..13784986 | 316..516 | 100 | -> | Plus |
| arm_2L | 13785051..13785521 | 517..986 | 99 | -> | Plus |
